Hb_002811_030

Information

Type -
Description -
Location Contig2811: 30668-34742
Sequence    

Annotation

kegg
ID rcu:RCOM_1428580
description cysteine synthase, putative (EC:2.5.1.51)
nr
ID XP_012089208.1
description PREDICTED: cysteine synthase [Jatropha curcas]
swissprot
ID Q43317
description Cysteine synthase OS=Citrullus lanatus PE=1 SV=1
trembl
ID A0A067JLB4
description Cysteine synthase OS=Jatropha curcas GN=JCGZ_23456 PE=3 SV=1
Gene Ontology
ID GO:0004124
description cysteine synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29384: 30611-34628
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_030 0.0 - - PREDICTED: cysteine synthase [Jatropha curcas]
2 Hb_000721_040 0.0953710213 - - PREDICTED: uncharacterized protein LOC105636110 isoform X1 [Jatropha curcas]
3 Hb_000392_190 0.1067253146 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
4 Hb_011794_080 0.1127711764 - - acyl-CoA thioesterase, putative [Ricinus communis]
5 Hb_000466_140 0.1144391535 - - hypothetical protein JCGZ_02122 [Jatropha curcas]
6 Hb_001348_020 0.1162637184 - - PREDICTED: uncharacterized protein LOC105638926 isoform X2 [Jatropha curcas]
7 Hb_000111_320 0.1169940835 transcription factor TF Family: bZIP Transcription factor HBP-1b(c1), putative [Ricinus communis]
8 Hb_099878_030 0.1182196851 - - PREDICTED: coiled-coil domain-containing protein R3HCC1L isoform X4 [Jatropha curcas]
9 Hb_000140_280 0.1183151912 - - hypothetical protein B456_001G157900 [Gossypium raimondii]
10 Hb_005357_160 0.123099221 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
11 Hb_000115_150 0.1242604004 - - PREDICTED: IST1 homolog [Jatropha curcas]
12 Hb_001119_060 0.124896086 - - PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X3 [Malus domestica]
13 Hb_000110_190 0.1249049509 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
14 Hb_001571_050 0.1253690153 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Populus euphratica]
15 Hb_004800_200 0.1263035232 - - -
16 Hb_011674_020 0.126329045 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
17 Hb_000872_010 0.126572799 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]
18 Hb_003747_020 0.1272767224 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [Jatropha curcas]
19 Hb_002965_090 0.1274411041 - - importin alpha, putative [Ricinus communis]
20 Hb_009787_030 0.1274600718 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002811_030 Hb_002811_030 Hb_000721_040 Hb_000721_040 Hb_002811_030--Hb_000721_040 Hb_000392_190 Hb_000392_190 Hb_002811_030--Hb_000392_190 Hb_011794_080 Hb_011794_080 Hb_002811_030--Hb_011794_080 Hb_000466_140 Hb_000466_140 Hb_002811_030--Hb_000466_140 Hb_001348_020 Hb_001348_020 Hb_002811_030--Hb_001348_020 Hb_000111_320 Hb_000111_320 Hb_002811_030--Hb_000111_320 Hb_004800_200 Hb_004800_200 Hb_000721_040--Hb_004800_200 Hb_011674_020 Hb_011674_020 Hb_000721_040--Hb_011674_020 Hb_000110_190 Hb_000110_190 Hb_000721_040--Hb_000110_190 Hb_000001_190 Hb_000001_190 Hb_000721_040--Hb_000001_190 Hb_179306_020 Hb_179306_020 Hb_000721_040--Hb_179306_020 Hb_000140_280 Hb_000140_280 Hb_000392_190--Hb_000140_280 Hb_006277_110 Hb_006277_110 Hb_000392_190--Hb_006277_110 Hb_003940_040 Hb_003940_040 Hb_000392_190--Hb_003940_040 Hb_099878_030 Hb_099878_030 Hb_000392_190--Hb_099878_030 Hb_000735_110 Hb_000735_110 Hb_000392_190--Hb_000735_110 Hb_009787_030 Hb_009787_030 Hb_000392_190--Hb_009787_030 Hb_000365_050 Hb_000365_050 Hb_011794_080--Hb_000365_050 Hb_025194_100 Hb_025194_100 Hb_011794_080--Hb_025194_100 Hb_001571_050 Hb_001571_050 Hb_011794_080--Hb_001571_050 Hb_000994_120 Hb_000994_120 Hb_011794_080--Hb_000994_120 Hb_011794_080--Hb_000392_190 Hb_011794_080--Hb_009787_030 Hb_000466_140--Hb_000111_320 Hb_001247_310 Hb_001247_310 Hb_000466_140--Hb_001247_310 Hb_000392_430 Hb_000392_430 Hb_000466_140--Hb_000392_430 Hb_000749_190 Hb_000749_190 Hb_000466_140--Hb_000749_190 Hb_002811_180 Hb_002811_180 Hb_000466_140--Hb_002811_180 Hb_003847_130 Hb_003847_130 Hb_000466_140--Hb_003847_130 Hb_062537_010 Hb_062537_010 Hb_001348_020--Hb_062537_010 Hb_000228_110 Hb_000228_110 Hb_001348_020--Hb_000228_110 Hb_011628_060 Hb_011628_060 Hb_001348_020--Hb_011628_060 Hb_001348_020--Hb_000111_320 Hb_001348_020--Hb_000392_430 Hb_023001_040 Hb_023001_040 Hb_001348_020--Hb_023001_040 Hb_000111_320--Hb_000392_430 Hb_001314_050 Hb_001314_050 Hb_000111_320--Hb_001314_050 Hb_000111_320--Hb_001247_310 Hb_000138_100 Hb_000138_100 Hb_000111_320--Hb_000138_100 Hb_000111_320--Hb_002811_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.5789 21.3588 25.1844 101.834 68.1859 82.0803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
91.2934 57.3641 45.0324 134.303 78.1692

CAGE analysis