Hb_011794_080

Information

Type -
Description -
Location Contig11794: 53106-59275
Sequence    

Annotation

kegg
ID rcu:RCOM_1615160
description acyl-CoA thioesterase, putative (EC:3.1.2.2)
nr
ID XP_002511851.1
description acyl-CoA thioesterase, putative [Ricinus communis]
swissprot
ID Q8VHK0
description Acyl-coenzyme A thioesterase 8 OS=Rattus norvegicus GN=Acot8 PE=2 SV=1
trembl
ID B9RDR2
description Acyl-CoA thioesterase, putative OS=Ricinus communis GN=RCOM_1615160 PE=4 SV=1
Gene Ontology
ID GO:0016290
description acyl-coenzyme a thioesterase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05406: 53094-59138 , PASA_asmbl_05407: 56337-56911
cDNA
(Sanger)
(ID:Location)		 032_L09.ab1: 53097-56332

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011794_080 0.0 - - acyl-CoA thioesterase, putative [Ricinus communis]
2 Hb_000365_050 0.0893444932 - - -
3 Hb_025194_100 0.0894189995 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
4 Hb_001571_050 0.0996693821 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Populus euphratica]
5 Hb_000994_120 0.1057029146 - - unknown [Populus trichocarpa]
6 Hb_000392_190 0.1057321474 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
7 Hb_009787_030 0.1059961029 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
8 Hb_002675_140 0.1068009561 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
9 Hb_006277_110 0.1087319435 - - protein with unknown function [Ricinus communis]
10 Hb_152371_010 0.1110610468 - - RNA-binding KH domain-containing protein [Theobroma cacao]
11 Hb_005914_080 0.1117309041 - - PREDICTED: uncharacterized protein LOC105632176 isoform X2 [Jatropha curcas]
12 Hb_002811_030 0.1127711764 - - PREDICTED: cysteine synthase [Jatropha curcas]
13 Hb_011344_120 0.1155803476 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
14 Hb_008103_050 0.1162021637 - - hypothetical protein JCGZ_07422 [Jatropha curcas]
15 Hb_002000_080 0.1162445476 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
16 Hb_002289_080 0.1174004419 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
17 Hb_003940_040 0.1174562147 - - conserved hypothetical protein [Ricinus communis]
18 Hb_073973_100 0.1180821634 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
19 Hb_011674_020 0.1190136367 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
20 Hb_000015_040 0.1209497052 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_011794_080 Hb_011794_080 Hb_000365_050 Hb_000365_050 Hb_011794_080--Hb_000365_050 Hb_025194_100 Hb_025194_100 Hb_011794_080--Hb_025194_100 Hb_001571_050 Hb_001571_050 Hb_011794_080--Hb_001571_050 Hb_000994_120 Hb_000994_120 Hb_011794_080--Hb_000994_120 Hb_000392_190 Hb_000392_190 Hb_011794_080--Hb_000392_190 Hb_009787_030 Hb_009787_030 Hb_011794_080--Hb_009787_030 Hb_004668_090 Hb_004668_090 Hb_000365_050--Hb_004668_090 Hb_132880_040 Hb_132880_040 Hb_000365_050--Hb_132880_040 Hb_002675_140 Hb_002675_140 Hb_000365_050--Hb_002675_140 Hb_000115_150 Hb_000115_150 Hb_000365_050--Hb_000115_150 Hb_001157_200 Hb_001157_200 Hb_000365_050--Hb_001157_200 Hb_002289_080 Hb_002289_080 Hb_025194_100--Hb_002289_080 Hb_152371_010 Hb_152371_010 Hb_025194_100--Hb_152371_010 Hb_000599_300 Hb_000599_300 Hb_025194_100--Hb_000599_300 Hb_000310_090 Hb_000310_090 Hb_025194_100--Hb_000310_090 Hb_002994_030 Hb_002994_030 Hb_025194_100--Hb_002994_030 Hb_000696_330 Hb_000696_330 Hb_025194_100--Hb_000696_330 Hb_002965_090 Hb_002965_090 Hb_001571_050--Hb_002965_090 Hb_002110_190 Hb_002110_190 Hb_001571_050--Hb_002110_190 Hb_011674_020 Hb_011674_020 Hb_001571_050--Hb_011674_020 Hb_000078_120 Hb_000078_120 Hb_001571_050--Hb_000078_120 Hb_004109_310 Hb_004109_310 Hb_001571_050--Hb_004109_310 Hb_000429_150 Hb_000429_150 Hb_001571_050--Hb_000429_150 Hb_008103_050 Hb_008103_050 Hb_000994_120--Hb_008103_050 Hb_000141_080 Hb_000141_080 Hb_000994_120--Hb_000141_080 Hb_000994_120--Hb_009787_030 Hb_000994_120--Hb_000599_300 Hb_004127_030 Hb_004127_030 Hb_000994_120--Hb_004127_030 Hb_001703_060 Hb_001703_060 Hb_000994_120--Hb_001703_060 Hb_000140_280 Hb_000140_280 Hb_000392_190--Hb_000140_280 Hb_006277_110 Hb_006277_110 Hb_000392_190--Hb_006277_110 Hb_003940_040 Hb_003940_040 Hb_000392_190--Hb_003940_040 Hb_099878_030 Hb_099878_030 Hb_000392_190--Hb_099878_030 Hb_000735_110 Hb_000735_110 Hb_000392_190--Hb_000735_110 Hb_000392_190--Hb_009787_030 Hb_001427_160 Hb_001427_160 Hb_009787_030--Hb_001427_160 Hb_001366_370 Hb_001366_370 Hb_009787_030--Hb_001366_370 Hb_011344_120 Hb_011344_120 Hb_009787_030--Hb_011344_120 Hb_009787_030--Hb_000141_080 Hb_009787_030--Hb_000115_150 Hb_002053_140 Hb_002053_140 Hb_009787_030--Hb_002053_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.6144 17.138 11.7051 42.0496 18.3645 33.8455
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.7885 30.6071 18.3689 42.8813 26.815

CAGE analysis