Hb_001247_310

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1247: 228647-229732
Sequence    

Annotation

kegg
ID pop:POPTR_0005s00450g
description hypothetical protein
nr
ID XP_006382262.1
description hypothetical protein POPTR_0005s00450g [Populus trichocarpa]
swissprot
ID A2A6A1
description G patch domain-containing protein 8 OS=Mus musculus GN=Gpatch8 PE=1 SV=1
trembl
ID U5GCU7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s00450g PE=4 SV=1
Gene Ontology
ID GO:0003676
description g patch domain-containing protein 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07505: 228224-255120
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_310 0.0 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s00450g [Populus trichocarpa]
2 Hb_000111_320 0.0626258064 transcription factor TF Family: bZIP Transcription factor HBP-1b(c1), putative [Ricinus communis]
3 Hb_000466_140 0.0656390357 - - hypothetical protein JCGZ_02122 [Jatropha curcas]
4 Hb_001119_060 0.0669468692 - - PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X3 [Malus domestica]
5 Hb_000075_040 0.0760975189 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
6 Hb_000392_430 0.0776087392 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
7 Hb_004319_080 0.077997007 - - PREDICTED: GPI ethanolamine phosphate transferase 1 [Jatropha curcas]
8 Hb_001021_150 0.0780500232 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
9 Hb_002965_090 0.0792343019 - - importin alpha, putative [Ricinus communis]
10 Hb_000640_170 0.0806323476 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
11 Hb_000074_080 0.0817928107 - - unknown [Populus trichocarpa]
12 Hb_004846_220 0.0819133019 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
13 Hb_000035_470 0.0840670051 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
14 Hb_041290_020 0.084545052 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]
15 Hb_003847_130 0.0849456094 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
16 Hb_007390_010 0.0862977386 - - catalytic, putative [Ricinus communis]
17 Hb_109000_020 0.08710955 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
18 Hb_005357_160 0.0877409788 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
19 Hb_000441_200 0.089804474 - - PREDICTED: small RNA 2'-O-methyltransferase-like isoform X1 [Jatropha curcas]
20 Hb_168978_030 0.0901490252 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]

Gene co-expression network

sample Hb_001247_310 Hb_001247_310 Hb_000111_320 Hb_000111_320 Hb_001247_310--Hb_000111_320 Hb_000466_140 Hb_000466_140 Hb_001247_310--Hb_000466_140 Hb_001119_060 Hb_001119_060 Hb_001247_310--Hb_001119_060 Hb_000075_040 Hb_000075_040 Hb_001247_310--Hb_000075_040 Hb_000392_430 Hb_000392_430 Hb_001247_310--Hb_000392_430 Hb_004319_080 Hb_004319_080 Hb_001247_310--Hb_004319_080 Hb_000111_320--Hb_000392_430 Hb_000111_320--Hb_000466_140 Hb_001314_050 Hb_001314_050 Hb_000111_320--Hb_001314_050 Hb_000138_100 Hb_000138_100 Hb_000111_320--Hb_000138_100 Hb_002811_180 Hb_002811_180 Hb_000111_320--Hb_002811_180 Hb_000466_140--Hb_000392_430 Hb_000749_190 Hb_000749_190 Hb_000466_140--Hb_000749_190 Hb_000466_140--Hb_002811_180 Hb_003847_130 Hb_003847_130 Hb_000466_140--Hb_003847_130 Hb_000074_080 Hb_000074_080 Hb_001119_060--Hb_000074_080 Hb_001119_060--Hb_000466_140 Hb_001119_060--Hb_000111_320 Hb_002965_090 Hb_002965_090 Hb_001119_060--Hb_002965_090 Hb_001119_060--Hb_000392_430 Hb_004450_040 Hb_004450_040 Hb_000075_040--Hb_004450_040 Hb_001021_150 Hb_001021_150 Hb_000075_040--Hb_001021_150 Hb_001946_400 Hb_001946_400 Hb_000075_040--Hb_001946_400 Hb_003292_030 Hb_003292_030 Hb_000075_040--Hb_003292_030 Hb_002553_060 Hb_002553_060 Hb_000075_040--Hb_002553_060 Hb_000392_430--Hb_001314_050 Hb_001671_100 Hb_001671_100 Hb_000392_430--Hb_001671_100 Hb_000392_430--Hb_002811_180 Hb_000948_160 Hb_000948_160 Hb_000392_430--Hb_000948_160 Hb_000035_470 Hb_000035_470 Hb_004319_080--Hb_000035_470 Hb_000329_800 Hb_000329_800 Hb_004319_080--Hb_000329_800 Hb_001301_150 Hb_001301_150 Hb_004319_080--Hb_001301_150 Hb_001040_100 Hb_001040_100 Hb_004319_080--Hb_001040_100 Hb_003883_060 Hb_003883_060 Hb_004319_080--Hb_003883_060 Hb_000640_170 Hb_000640_170 Hb_004319_080--Hb_000640_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.28264 5.26527 9.08724 12.9302 11.3471 13.3119
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.296 13.3327 6.7589 16.4157 16.0084

CAGE analysis