Hb_003292_030

Information

Type -
Description -
Location Contig3292: 11568-26034
Sequence    

Annotation

kegg
ID pop:POPTR_0014s16420g
description POPTRDRAFT_834971; hypothetical protein
nr
ID XP_011010470.1
description PREDICTED: exosome complex component RRP42 [Populus euphratica]
swissprot
ID Q9D0M0
description Exosome complex exonuclease RRP42 OS=Mus musculus GN=Exosc7 PE=2 SV=2
trembl
ID B9IAS5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s16420g PE=4 SV=1
Gene Ontology
ID GO:0005737
description exosome complex component rrp42-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34606: 11714-26065 , PASA_asmbl_34607: 17500-25977
cDNA
(Sanger)
(ID:Location)		 012_A17.ab1: 25456-26065 , 019_K06.ab1: 11714-25382 , 034_H22.ab1: 25456-26065

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003292_030 0.0 - - PREDICTED: exosome complex component RRP42 [Populus euphratica]
2 Hb_012055_030 0.0689988097 - - Protein FRIGIDA, putative [Ricinus communis]
3 Hb_000075_040 0.0778490119 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
4 Hb_005542_130 0.0800522718 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
5 Hb_003159_140 0.0912069671 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004846_220 0.0917852694 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
7 Hb_001247_310 0.098382041 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s00450g [Populus trichocarpa]
8 Hb_001040_100 0.1005414056 - - PREDICTED: general transcription factor IIH subunit 4 [Jatropha curcas]
9 Hb_004310_140 0.1013712844 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
10 Hb_006483_110 0.1018130637 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
11 Hb_004450_040 0.1018903258 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
12 Hb_029879_010 0.1026396127 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
13 Hb_001301_100 0.1041917755 - - transporter, putative [Ricinus communis]
14 Hb_001021_150 0.1042200756 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
15 Hb_003847_130 0.1043447427 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
16 Hb_004319_080 0.1057791218 - - PREDICTED: GPI ethanolamine phosphate transferase 1 [Jatropha curcas]
17 Hb_041290_020 0.1060434608 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]
18 Hb_002592_060 0.106347538 - - conserved hypothetical protein [Ricinus communis]
19 Hb_028960_020 0.1064463912 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
20 Hb_002439_010 0.1067331022 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003292_030 Hb_003292_030 Hb_012055_030 Hb_012055_030 Hb_003292_030--Hb_012055_030 Hb_000075_040 Hb_000075_040 Hb_003292_030--Hb_000075_040 Hb_005542_130 Hb_005542_130 Hb_003292_030--Hb_005542_130 Hb_003159_140 Hb_003159_140 Hb_003292_030--Hb_003159_140 Hb_004846_220 Hb_004846_220 Hb_003292_030--Hb_004846_220 Hb_001247_310 Hb_001247_310 Hb_003292_030--Hb_001247_310 Hb_012055_030--Hb_000075_040 Hb_017987_030 Hb_017987_030 Hb_012055_030--Hb_017987_030 Hb_012055_030--Hb_005542_130 Hb_004450_040 Hb_004450_040 Hb_012055_030--Hb_004450_040 Hb_001109_050 Hb_001109_050 Hb_012055_030--Hb_001109_050 Hb_000075_040--Hb_004450_040 Hb_001021_150 Hb_001021_150 Hb_000075_040--Hb_001021_150 Hb_001946_400 Hb_001946_400 Hb_000075_040--Hb_001946_400 Hb_000075_040--Hb_001247_310 Hb_002553_060 Hb_002553_060 Hb_000075_040--Hb_002553_060 Hb_005542_130--Hb_003159_140 Hb_000757_030 Hb_000757_030 Hb_005542_130--Hb_000757_030 Hb_002374_230 Hb_002374_230 Hb_005542_130--Hb_002374_230 Hb_001623_270 Hb_001623_270 Hb_005542_130--Hb_001623_270 Hb_000789_320 Hb_000789_320 Hb_005542_130--Hb_000789_320 Hb_001040_100 Hb_001040_100 Hb_003159_140--Hb_001040_100 Hb_000329_800 Hb_000329_800 Hb_003159_140--Hb_000329_800 Hb_002889_010 Hb_002889_010 Hb_003159_140--Hb_002889_010 Hb_001153_210 Hb_001153_210 Hb_003159_140--Hb_001153_210 Hb_000035_470 Hb_000035_470 Hb_003159_140--Hb_000035_470 Hb_000138_100 Hb_000138_100 Hb_004846_220--Hb_000138_100 Hb_041290_020 Hb_041290_020 Hb_004846_220--Hb_041290_020 Hb_002592_060 Hb_002592_060 Hb_004846_220--Hb_002592_060 Hb_004846_220--Hb_001021_150 Hb_004254_090 Hb_004254_090 Hb_004846_220--Hb_004254_090 Hb_006483_110 Hb_006483_110 Hb_004846_220--Hb_006483_110 Hb_000111_320 Hb_000111_320 Hb_001247_310--Hb_000111_320 Hb_000466_140 Hb_000466_140 Hb_001247_310--Hb_000466_140 Hb_001119_060 Hb_001119_060 Hb_001247_310--Hb_001119_060 Hb_000392_430 Hb_000392_430 Hb_001247_310--Hb_000392_430 Hb_004319_080 Hb_004319_080 Hb_001247_310--Hb_004319_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.68972 2.15359 5.93432 3.07128 4.40898 4.60025
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.37364 5.07655 2.7711 7.68152 7.19456

CAGE analysis