Hb_003159_140

Information

Type -
Description -
Location Contig3159: 181409-185997
Sequence    

Annotation

kegg
ID rcu:RCOM_0926010
description hypothetical protein
nr
ID XP_002515574.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F6HH45
description tRNA (guanine(37)-N1)-methyltransferase 2 OS=Vitis vinifera GN=VIT_11s0016g04350 PE=3 SV=1
trembl
ID B9RPA5
description tRNA (guanine(37)-N1)-methyltransferase OS=Ricinus communis GN=RCOM_0926010 PE=3 SV=1
Gene Ontology
ID GO:0005739
description trna (guanine -n1)-methyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33297: 181533-185993 , PASA_asmbl_33298: 181975-182411
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003159_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001040_100 0.0582221099 - - PREDICTED: general transcription factor IIH subunit 4 [Jatropha curcas]
3 Hb_000329_800 0.065059163 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005542_130 0.066152104 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
5 Hb_002889_010 0.0686874918 - - ubx domain-containing, putative [Ricinus communis]
6 Hb_001153_210 0.0749063459 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
7 Hb_000035_470 0.0751156093 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
8 Hb_000603_030 0.0762168543 - - Ribonuclease III, putative [Ricinus communis]
9 Hb_001186_090 0.0764307009 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Jatropha curcas]
10 Hb_002374_230 0.0766409747 - - PREDICTED: centromere-associated protein E [Jatropha curcas]
11 Hb_028960_020 0.0767830422 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
12 Hb_005000_170 0.0775437932 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
13 Hb_005289_040 0.0783887428 - - poly(A) polymerase, putative [Ricinus communis]
14 Hb_004319_080 0.0788740942 - - PREDICTED: GPI ethanolamine phosphate transferase 1 [Jatropha curcas]
15 Hb_004020_040 0.0803804821 - - PREDICTED: GTP-binding protein At3g49725, chloroplastic [Jatropha curcas]
16 Hb_063716_100 0.0814315336 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
17 Hb_000331_110 0.081778843 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
18 Hb_006483_110 0.0820526643 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
19 Hb_002986_100 0.0830369949 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
20 Hb_000416_110 0.0831451708 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003159_140 Hb_003159_140 Hb_001040_100 Hb_001040_100 Hb_003159_140--Hb_001040_100 Hb_000329_800 Hb_000329_800 Hb_003159_140--Hb_000329_800 Hb_005542_130 Hb_005542_130 Hb_003159_140--Hb_005542_130 Hb_002889_010 Hb_002889_010 Hb_003159_140--Hb_002889_010 Hb_001153_210 Hb_001153_210 Hb_003159_140--Hb_001153_210 Hb_000035_470 Hb_000035_470 Hb_003159_140--Hb_000035_470 Hb_001040_100--Hb_000035_470 Hb_004020_040 Hb_004020_040 Hb_001040_100--Hb_004020_040 Hb_004319_080 Hb_004319_080 Hb_001040_100--Hb_004319_080 Hb_003438_050 Hb_003438_050 Hb_001040_100--Hb_003438_050 Hb_002681_090 Hb_002681_090 Hb_001040_100--Hb_002681_090 Hb_000329_800--Hb_004319_080 Hb_000329_800--Hb_000035_470 Hb_001301_150 Hb_001301_150 Hb_000329_800--Hb_001301_150 Hb_004846_220 Hb_004846_220 Hb_000329_800--Hb_004846_220 Hb_005000_170 Hb_005000_170 Hb_000329_800--Hb_005000_170 Hb_000757_030 Hb_000757_030 Hb_005542_130--Hb_000757_030 Hb_002374_230 Hb_002374_230 Hb_005542_130--Hb_002374_230 Hb_003292_030 Hb_003292_030 Hb_005542_130--Hb_003292_030 Hb_001623_270 Hb_001623_270 Hb_005542_130--Hb_001623_270 Hb_000789_320 Hb_000789_320 Hb_005542_130--Hb_000789_320 Hb_016777_040 Hb_016777_040 Hb_002889_010--Hb_016777_040 Hb_003861_050 Hb_003861_050 Hb_002889_010--Hb_003861_050 Hb_002471_240 Hb_002471_240 Hb_002889_010--Hb_002471_240 Hb_001377_310 Hb_001377_310 Hb_002889_010--Hb_001377_310 Hb_000816_250 Hb_000816_250 Hb_002889_010--Hb_000816_250 Hb_000134_270 Hb_000134_270 Hb_002889_010--Hb_000134_270 Hb_138435_010 Hb_138435_010 Hb_001153_210--Hb_138435_010 Hb_002986_100 Hb_002986_100 Hb_001153_210--Hb_002986_100 Hb_005867_070 Hb_005867_070 Hb_001153_210--Hb_005867_070 Hb_001153_210--Hb_003861_050 Hb_001153_210--Hb_004020_040 Hb_000339_040 Hb_000339_040 Hb_001153_210--Hb_000339_040 Hb_000035_470--Hb_004319_080 Hb_015807_050 Hb_015807_050 Hb_000035_470--Hb_015807_050 Hb_001021_150 Hb_001021_150 Hb_000035_470--Hb_001021_150 Hb_168978_030 Hb_168978_030 Hb_000035_470--Hb_168978_030 Hb_002073_190 Hb_002073_190 Hb_000035_470--Hb_002073_190 Hb_000976_140 Hb_000976_140 Hb_000035_470--Hb_000976_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.59649 4.63067 9.39681 4.76329 5.90581 7.61832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.76751 5.8562 3.39033 8.53837 6.56891

CAGE analysis