Hb_012055_030

Information

Type -
Description -
Location Contig12055: 27266-29590
Sequence    

Annotation

kegg
ID rcu:RCOM_1154790
description Protein FRIGIDA, putative
nr
ID XP_002524951.1
description Protein FRIGIDA, putative [Ricinus communis]
swissprot
ID Q67ZB3
description FRIGIDA-like protein 3 OS=Arabidopsis thaliana GN=FRL3 PE=1 SV=1
trembl
ID B9SG32
description Protein FRIGIDA, putative OS=Ricinus communis GN=RCOM_1154790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012055_030 0.0 - - Protein FRIGIDA, putative [Ricinus communis]
2 Hb_003292_030 0.0689988097 - - PREDICTED: exosome complex component RRP42 [Populus euphratica]
3 Hb_000075_040 0.0836713819 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
4 Hb_017987_030 0.0896632035 - - PREDICTED: uncharacterized protein LOC105630796 [Jatropha curcas]
5 Hb_005542_130 0.0956668382 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
6 Hb_004450_040 0.0958141917 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
7 Hb_001109_050 0.1019739446 - - PREDICTED: ankyrin-1 [Jatropha curcas]
8 Hb_003678_020 0.1032978604 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005405_020 0.1033714746 - - PREDICTED: petal death protein isoform X1 [Jatropha curcas]
10 Hb_007192_070 0.1038392813 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
11 Hb_002014_030 0.1041461683 - - hypothetical protein JCGZ_07251 [Jatropha curcas]
12 Hb_000221_140 0.1044400928 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
13 Hb_002439_010 0.1050432311 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
14 Hb_035273_020 0.1054885379 - - PREDICTED: amidase 1-like isoform X1 [Jatropha curcas]
15 Hb_005731_160 0.1059389604 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_000465_190 0.1091298015 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X2 [Jatropha curcas]
17 Hb_000212_440 0.1095460547 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_003376_230 0.1100871461 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
19 Hb_005127_030 0.1101891109 - - PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
20 Hb_004846_220 0.1102336474 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012055_030 Hb_012055_030 Hb_003292_030 Hb_003292_030 Hb_012055_030--Hb_003292_030 Hb_000075_040 Hb_000075_040 Hb_012055_030--Hb_000075_040 Hb_017987_030 Hb_017987_030 Hb_012055_030--Hb_017987_030 Hb_005542_130 Hb_005542_130 Hb_012055_030--Hb_005542_130 Hb_004450_040 Hb_004450_040 Hb_012055_030--Hb_004450_040 Hb_001109_050 Hb_001109_050 Hb_012055_030--Hb_001109_050 Hb_003292_030--Hb_000075_040 Hb_003292_030--Hb_005542_130 Hb_003159_140 Hb_003159_140 Hb_003292_030--Hb_003159_140 Hb_004846_220 Hb_004846_220 Hb_003292_030--Hb_004846_220 Hb_001247_310 Hb_001247_310 Hb_003292_030--Hb_001247_310 Hb_000075_040--Hb_004450_040 Hb_001021_150 Hb_001021_150 Hb_000075_040--Hb_001021_150 Hb_001946_400 Hb_001946_400 Hb_000075_040--Hb_001946_400 Hb_000075_040--Hb_001247_310 Hb_002553_060 Hb_002553_060 Hb_000075_040--Hb_002553_060 Hb_002014_030 Hb_002014_030 Hb_017987_030--Hb_002014_030 Hb_007192_070 Hb_007192_070 Hb_017987_030--Hb_007192_070 Hb_000110_250 Hb_000110_250 Hb_017987_030--Hb_000110_250 Hb_000840_200 Hb_000840_200 Hb_017987_030--Hb_000840_200 Hb_017987_030--Hb_000075_040 Hb_005542_130--Hb_003159_140 Hb_000757_030 Hb_000757_030 Hb_005542_130--Hb_000757_030 Hb_002374_230 Hb_002374_230 Hb_005542_130--Hb_002374_230 Hb_001623_270 Hb_001623_270 Hb_005542_130--Hb_001623_270 Hb_000789_320 Hb_000789_320 Hb_005542_130--Hb_000789_320 Hb_000462_170 Hb_000462_170 Hb_004450_040--Hb_000462_170 Hb_004450_040--Hb_001946_400 Hb_004450_040--Hb_001021_150 Hb_001301_150 Hb_001301_150 Hb_004450_040--Hb_001301_150 Hb_000708_030 Hb_000708_030 Hb_004450_040--Hb_000708_030 Hb_005494_010 Hb_005494_010 Hb_001109_050--Hb_005494_010 Hb_000221_140 Hb_000221_140 Hb_001109_050--Hb_000221_140 Hb_033312_010 Hb_033312_010 Hb_001109_050--Hb_033312_010 Hb_012150_030 Hb_012150_030 Hb_001109_050--Hb_012150_030 Hb_134849_010 Hb_134849_010 Hb_001109_050--Hb_134849_010 Hb_005127_030 Hb_005127_030 Hb_001109_050--Hb_005127_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.72869 0.718572 2.26411 1.31202 1.03259 1.73478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.88507 2.19894 1.05543 2.44046 3.04453

CAGE analysis