Hb_116420_010

Information

Type -
Description -
Location Contig116420: 1-2421
Sequence    

Annotation

kegg
ID sot:102604542
description uncharacterized LOC102604542
nr
ID XP_012066659.1
description PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L1T8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00233 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116420_010 0.0 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
2 Hb_006384_010 0.1039100605 - - WD-repeat protein, putative [Ricinus communis]
3 Hb_001159_150 0.1494662934 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_006816_270 0.1710828566 - - conserved hypothetical protein [Ricinus communis]
5 Hb_009680_020 0.1713938676 - - PREDICTED: 40S ribosomal protein S10 [Jatropha curcas]
6 Hb_007943_200 0.1828003287 - - Uncharacterized protein isoform 2 [Theobroma cacao]
7 Hb_000676_140 0.1837459032 - - structural constituent of ribosome, putative [Ricinus communis]
8 Hb_050959_010 0.1840878984 - - -
9 Hb_004449_180 0.1867541246 - - PREDICTED: SAC3 family protein 1 [Jatropha curcas]
10 Hb_000656_190 0.1898689304 - - PREDICTED: probable nucleoside diphosphate kinase 5 [Jatropha curcas]
11 Hb_000011_570 0.1907900902 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
12 Hb_000120_540 0.1909232499 - - translation initiation factor, putative [Ricinus communis]
13 Hb_001221_560 0.1932904024 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase 1B-like [Jatropha curcas]
14 Hb_010174_150 0.1960537051 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_003106_220 0.1983434501 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
16 Hb_035273_010 0.1996507815 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
17 Hb_000187_040 0.1997976254 - - PREDICTED: pyridoxal kinase isoform X5 [Vitis vinifera]
18 Hb_004357_050 0.2000480636 - - PREDICTED: histone deacetylase HDT1-like [Jatropha curcas]
19 Hb_000110_250 0.2001021099 - - PREDICTED: homologous-pairing protein 2 homolog [Jatropha curcas]
20 Hb_004709_010 0.2041810833 - - hypothetical protein B456_007G097300 [Gossypium raimondii]

Gene co-expression network

sample Hb_116420_010 Hb_116420_010 Hb_006384_010 Hb_006384_010 Hb_116420_010--Hb_006384_010 Hb_001159_150 Hb_001159_150 Hb_116420_010--Hb_001159_150 Hb_006816_270 Hb_006816_270 Hb_116420_010--Hb_006816_270 Hb_009680_020 Hb_009680_020 Hb_116420_010--Hb_009680_020 Hb_007943_200 Hb_007943_200 Hb_116420_010--Hb_007943_200 Hb_000676_140 Hb_000676_140 Hb_116420_010--Hb_000676_140 Hb_004357_050 Hb_004357_050 Hb_006384_010--Hb_004357_050 Hb_004449_180 Hb_004449_180 Hb_006384_010--Hb_004449_180 Hb_000398_060 Hb_000398_060 Hb_006384_010--Hb_000398_060 Hb_002272_270 Hb_002272_270 Hb_006384_010--Hb_002272_270 Hb_005288_130 Hb_005288_130 Hb_006384_010--Hb_005288_130 Hb_003747_060 Hb_003747_060 Hb_001159_150--Hb_003747_060 Hb_001159_150--Hb_007943_200 Hb_002477_050 Hb_002477_050 Hb_001159_150--Hb_002477_050 Hb_000365_050 Hb_000365_050 Hb_001159_150--Hb_000365_050 Hb_011794_080 Hb_011794_080 Hb_001159_150--Hb_011794_080 Hb_000923_090 Hb_000923_090 Hb_006816_270--Hb_000923_090 Hb_000031_260 Hb_000031_260 Hb_006816_270--Hb_000031_260 Hb_001369_250 Hb_001369_250 Hb_006816_270--Hb_001369_250 Hb_001288_030 Hb_001288_030 Hb_006816_270--Hb_001288_030 Hb_000390_140 Hb_000390_140 Hb_006816_270--Hb_000390_140 Hb_017987_030 Hb_017987_030 Hb_009680_020--Hb_017987_030 Hb_000107_150 Hb_000107_150 Hb_009680_020--Hb_000107_150 Hb_000110_250 Hb_000110_250 Hb_009680_020--Hb_000110_250 Hb_000179_270 Hb_000179_270 Hb_009680_020--Hb_000179_270 Hb_000733_190 Hb_000733_190 Hb_009680_020--Hb_000733_190 Hb_002477_010 Hb_002477_010 Hb_009680_020--Hb_002477_010 Hb_006153_030 Hb_006153_030 Hb_007943_200--Hb_006153_030 Hb_007943_200--Hb_002477_010 Hb_005694_020 Hb_005694_020 Hb_007943_200--Hb_005694_020 Hb_143629_130 Hb_143629_130 Hb_007943_200--Hb_143629_130 Hb_148130_020 Hb_148130_020 Hb_007943_200--Hb_148130_020 Hb_002735_050 Hb_002735_050 Hb_007943_200--Hb_002735_050 Hb_000011_570 Hb_000011_570 Hb_000676_140--Hb_000011_570 Hb_004709_010 Hb_004709_010 Hb_000676_140--Hb_004709_010 Hb_000866_240 Hb_000866_240 Hb_000676_140--Hb_000866_240 Hb_014720_040 Hb_014720_040 Hb_000676_140--Hb_014720_040 Hb_001016_150 Hb_001016_150 Hb_000676_140--Hb_001016_150 Hb_001863_430 Hb_001863_430 Hb_000676_140--Hb_001863_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0391866 0.0346106 0.100887 0.181205 0.0514919 0.0993261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.178471 0.210616 0 0.17738 0.0980851

CAGE analysis