Hb_007943_200

Information

Type -
Description -
Location Contig7943: 159990-165050
Sequence    

Annotation

kegg
ID tcc:TCM_037862
description Uncharacterized protein isoform 1
nr
ID XP_007013146.1
description Uncharacterized protein isoform 2 [Theobroma cacao]
swissprot
ID F4IUE7
description Protein CONTINUOUS VASCULAR RING 1 OS=Arabidopsis thaliana GN=COV1 PE=1 SV=2
trembl
ID A0A061GLN2
description Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_037862 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007943_200 0.0 - - Uncharacterized protein isoform 2 [Theobroma cacao]
2 Hb_006153_030 0.1211053892 - - PREDICTED: probable transaldolase [Jatropha curcas]
3 Hb_002477_010 0.1411285068 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005694_020 0.1485564448 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
5 Hb_143629_130 0.1509317934 - - unnamed protein product [Coffea canephora]
6 Hb_148130_020 0.1518586985 - - -
7 Hb_002735_050 0.1523808096 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74 isoform X1 [Jatropha curcas]
8 Hb_000016_060 0.1566319547 - - mads box protein, putative [Ricinus communis]
9 Hb_000023_290 0.1590636679 - - steroid binding protein, putative [Ricinus communis]
10 Hb_003305_020 0.1592959067 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
11 Hb_002481_060 0.1595170061 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
12 Hb_000179_270 0.1595818245 - - hypothetical protein JCGZ_07444 [Jatropha curcas]
13 Hb_002477_050 0.1602519113 - - unnamed protein product [Coffea canephora]
14 Hb_004709_020 0.1605715403 - - PREDICTED: putative threonine aspartase [Jatropha curcas]
15 Hb_001159_150 0.1608567687 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_007390_020 0.1611298865 - - PREDICTED: protein FMP32, mitochondrial-like [Populus euphratica]
17 Hb_000603_070 0.1616111775 - - -
18 Hb_000087_070 0.161992939 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
19 Hb_000365_050 0.1629216473 - - -
20 Hb_000046_170 0.16683952 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007943_200 Hb_007943_200 Hb_006153_030 Hb_006153_030 Hb_007943_200--Hb_006153_030 Hb_002477_010 Hb_002477_010 Hb_007943_200--Hb_002477_010 Hb_005694_020 Hb_005694_020 Hb_007943_200--Hb_005694_020 Hb_143629_130 Hb_143629_130 Hb_007943_200--Hb_143629_130 Hb_148130_020 Hb_148130_020 Hb_007943_200--Hb_148130_020 Hb_002735_050 Hb_002735_050 Hb_007943_200--Hb_002735_050 Hb_001799_200 Hb_001799_200 Hb_006153_030--Hb_001799_200 Hb_006153_030--Hb_005694_020 Hb_000016_060 Hb_000016_060 Hb_006153_030--Hb_000016_060 Hb_006153_030--Hb_002735_050 Hb_008642_030 Hb_008642_030 Hb_006153_030--Hb_008642_030 Hb_012022_050 Hb_012022_050 Hb_002477_010--Hb_012022_050 Hb_000288_020 Hb_000288_020 Hb_002477_010--Hb_000288_020 Hb_002876_020 Hb_002876_020 Hb_002477_010--Hb_002876_020 Hb_003305_020 Hb_003305_020 Hb_002477_010--Hb_003305_020 Hb_032920_070 Hb_032920_070 Hb_002477_010--Hb_032920_070 Hb_009680_020 Hb_009680_020 Hb_002477_010--Hb_009680_020 Hb_002078_260 Hb_002078_260 Hb_005694_020--Hb_002078_260 Hb_007894_230 Hb_007894_230 Hb_005694_020--Hb_007894_230 Hb_082006_010 Hb_082006_010 Hb_005694_020--Hb_082006_010 Hb_041205_010 Hb_041205_010 Hb_005694_020--Hb_041205_010 Hb_132180_010 Hb_132180_010 Hb_005694_020--Hb_132180_010 Hb_029142_070 Hb_029142_070 Hb_005694_020--Hb_029142_070 Hb_002414_060 Hb_002414_060 Hb_143629_130--Hb_002414_060 Hb_007558_100 Hb_007558_100 Hb_143629_130--Hb_007558_100 Hb_000035_330 Hb_000035_330 Hb_143629_130--Hb_000035_330 Hb_003055_040 Hb_003055_040 Hb_143629_130--Hb_003055_040 Hb_002686_310 Hb_002686_310 Hb_143629_130--Hb_002686_310 Hb_004317_060 Hb_004317_060 Hb_143629_130--Hb_004317_060 Hb_002781_030 Hb_002781_030 Hb_148130_020--Hb_002781_030 Hb_010042_020 Hb_010042_020 Hb_148130_020--Hb_010042_020 Hb_033152_070 Hb_033152_070 Hb_148130_020--Hb_033152_070 Hb_000928_190 Hb_000928_190 Hb_148130_020--Hb_000928_190 Hb_000258_240 Hb_000258_240 Hb_148130_020--Hb_000258_240 Hb_000008_190 Hb_000008_190 Hb_148130_020--Hb_000008_190 Hb_003697_050 Hb_003697_050 Hb_002735_050--Hb_003697_050 Hb_004935_060 Hb_004935_060 Hb_002735_050--Hb_004935_060 Hb_003141_070 Hb_003141_070 Hb_002735_050--Hb_003141_070 Hb_002289_080 Hb_002289_080 Hb_002735_050--Hb_002289_080 Hb_002284_230 Hb_002284_230 Hb_002735_050--Hb_002284_230 Hb_025098_010 Hb_025098_010 Hb_002735_050--Hb_025098_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.578371 1.21604 0.964649 5.73588 0.813047 2.98984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.87104 3.43558 0.535465 3.09296 2.47705

CAGE analysis