Hb_006384_010

Information

Type -
Description -
Location Contig6384: 27695-33709
Sequence    

Annotation

kegg
ID rcu:RCOM_0534040
description WD-repeat protein, putative (EC:2.3.1.48)
nr
ID XP_002521518.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q9P775
description Uncharacterized WD repeat-containing protein C17D11.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1711.16 PE=1 SV=1
trembl
ID B9S699
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0534040 PE=4 SV=1
Gene Ontology
ID GO:0004402
description uncharacterized wd repeat-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52058: 27591-27756
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006384_010 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_116420_010 0.1039100605 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
3 Hb_004357_050 0.1351025475 - - PREDICTED: histone deacetylase HDT1-like [Jatropha curcas]
4 Hb_004449_180 0.1422847535 - - PREDICTED: SAC3 family protein 1 [Jatropha curcas]
5 Hb_000398_060 0.1460853248 - - PREDICTED: survival of motor neuron-related-splicing factor 30 [Jatropha curcas]
6 Hb_002272_270 0.1527957134 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
7 Hb_005288_130 0.1528385354 - - protein with unknown function [Ricinus communis]
8 Hb_000270_330 0.153937292 - - ribosomal protein S6 kinase, putative [Ricinus communis]
9 Hb_050959_010 0.1543137007 - - -
10 Hb_000120_540 0.1545815467 - - translation initiation factor, putative [Ricinus communis]
11 Hb_000187_040 0.1547267519 - - PREDICTED: pyridoxal kinase isoform X5 [Vitis vinifera]
12 Hb_000215_090 0.1565698436 - - cytochrome b5 domain-containing family protein [Populus trichocarpa]
13 Hb_002218_030 0.1578139065 - - hypothetical protein B456_007G345200 [Gossypium raimondii]
14 Hb_001821_110 0.1595976587 - - PREDICTED: ubiquinol oxidase, mitochondrial [Jatropha curcas]
15 Hb_168893_020 0.1603120726 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
16 Hb_035273_010 0.1608339827 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
17 Hb_010174_150 0.1614015537 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_009680_020 0.1617616781 - - PREDICTED: 40S ribosomal protein S10 [Jatropha curcas]
19 Hb_000116_490 0.1641374081 - - PREDICTED: WD repeat-containing protein 55 homolog [Jatropha curcas]
20 Hb_000110_250 0.1646755191 - - PREDICTED: homologous-pairing protein 2 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_006384_010 Hb_006384_010 Hb_116420_010 Hb_116420_010 Hb_006384_010--Hb_116420_010 Hb_004357_050 Hb_004357_050 Hb_006384_010--Hb_004357_050 Hb_004449_180 Hb_004449_180 Hb_006384_010--Hb_004449_180 Hb_000398_060 Hb_000398_060 Hb_006384_010--Hb_000398_060 Hb_002272_270 Hb_002272_270 Hb_006384_010--Hb_002272_270 Hb_005288_130 Hb_005288_130 Hb_006384_010--Hb_005288_130 Hb_001159_150 Hb_001159_150 Hb_116420_010--Hb_001159_150 Hb_006816_270 Hb_006816_270 Hb_116420_010--Hb_006816_270 Hb_009680_020 Hb_009680_020 Hb_116420_010--Hb_009680_020 Hb_007943_200 Hb_007943_200 Hb_116420_010--Hb_007943_200 Hb_000676_140 Hb_000676_140 Hb_116420_010--Hb_000676_140 Hb_000215_090 Hb_000215_090 Hb_004357_050--Hb_000215_090 Hb_004357_050--Hb_005288_130 Hb_000116_490 Hb_000116_490 Hb_004357_050--Hb_000116_490 Hb_004109_340 Hb_004109_340 Hb_004357_050--Hb_004109_340 Hb_032202_100 Hb_032202_100 Hb_004357_050--Hb_032202_100 Hb_000130_270 Hb_000130_270 Hb_004357_050--Hb_000130_270 Hb_000179_270 Hb_000179_270 Hb_004449_180--Hb_000179_270 Hb_004449_180--Hb_002272_270 Hb_011344_200 Hb_011344_200 Hb_004449_180--Hb_011344_200 Hb_000555_100 Hb_000555_100 Hb_004449_180--Hb_000555_100 Hb_000889_010 Hb_000889_010 Hb_004449_180--Hb_000889_010 Hb_000087_070 Hb_000087_070 Hb_004449_180--Hb_000087_070 Hb_002301_100 Hb_002301_100 Hb_000398_060--Hb_002301_100 Hb_000398_060--Hb_005288_130 Hb_000363_190 Hb_000363_190 Hb_000398_060--Hb_000363_190 Hb_001828_180 Hb_001828_180 Hb_000398_060--Hb_001828_180 Hb_012733_040 Hb_012733_040 Hb_000398_060--Hb_012733_040 Hb_001269_130 Hb_001269_130 Hb_000398_060--Hb_001269_130 Hb_000840_200 Hb_000840_200 Hb_002272_270--Hb_000840_200 Hb_002272_270--Hb_000179_270 Hb_002272_270--Hb_000087_070 Hb_015675_040 Hb_015675_040 Hb_002272_270--Hb_015675_040 Hb_002272_270--Hb_005288_130 Hb_157023_020 Hb_157023_020 Hb_002272_270--Hb_157023_020 Hb_005288_130--Hb_000116_490 Hb_163175_010 Hb_163175_010 Hb_005288_130--Hb_163175_010 Hb_005288_130--Hb_000840_200 Hb_065525_080 Hb_065525_080 Hb_005288_130--Hb_065525_080 Hb_000663_060 Hb_000663_060 Hb_005288_130--Hb_000663_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.726925 0.721032 2.36628 2.48201 0.982553 1.24594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.18856 2.95488 0.12036 3.04984 1.743

CAGE analysis