Hb_000733_190

Information

Type -
Description -
Location Contig733: 151521-157302
Sequence    

Annotation

kegg
ID rcu:RCOM_1482680
description zinc ion binding protein, putative
nr
ID XP_002524242.1
description zinc ion binding protein, putative [Ricinus communis]
swissprot
ID Q0WSN2
description Protein DA1-related 2 OS=Arabidopsis thaliana GN=DAR2 PE=2 SV=1
trembl
ID B9SE23
description Zinc ion binding protein, putative OS=Ricinus communis GN=RCOM_1482680 PE=4 SV=1
Gene Ontology
ID GO:0046872
description protein da1-related 2-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000733_190 0.0 - - zinc ion binding protein, putative [Ricinus communis]
2 Hb_000599_200 0.1121101165 - - ABC transporter family protein [Populus trichocarpa]
3 Hb_001242_120 0.1239992345 - - PREDICTED: carboxypeptidase D [Jatropha curcas]
4 Hb_001051_050 0.1262276351 - - conserved hypothetical protein [Ricinus communis]
5 Hb_009680_020 0.1290514121 - - PREDICTED: 40S ribosomal protein S10 [Jatropha curcas]
6 Hb_012733_040 0.1304081792 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
7 Hb_002928_090 0.1336240844 - - PREDICTED: metallocarboxypeptidase A-like protein TRV_02598 [Jatropha curcas]
8 Hb_000438_140 0.1351093739 - - hypothetical protein CISIN_1g018088mg [Citrus sinensis]
9 Hb_007821_030 0.1352563599 - - 5'-nucleotidase domain-containing [Gossypium arboreum]
10 Hb_134849_010 0.1364645589 - - ATP synthase subunit d, putative [Ricinus communis]
11 Hb_001578_020 0.1364751779 - - Protein virR, putative [Ricinus communis]
12 Hb_001369_790 0.1375214387 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
13 Hb_005800_030 0.1381653141 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
14 Hb_008695_200 0.1404190741 - - Protein grpE, putative [Ricinus communis]
15 Hb_004644_030 0.1417083563 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
16 Hb_003878_150 0.1417490612 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
17 Hb_000014_040 0.142338071 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002272_270 0.1424202655 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
19 Hb_016219_030 0.1427632668 - - cytochrome P450, putative [Ricinus communis]
20 Hb_001104_130 0.1440967796 - - C-14 sterol reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000733_190 Hb_000733_190 Hb_000599_200 Hb_000599_200 Hb_000733_190--Hb_000599_200 Hb_001242_120 Hb_001242_120 Hb_000733_190--Hb_001242_120 Hb_001051_050 Hb_001051_050 Hb_000733_190--Hb_001051_050 Hb_009680_020 Hb_009680_020 Hb_000733_190--Hb_009680_020 Hb_012733_040 Hb_012733_040 Hb_000733_190--Hb_012733_040 Hb_002928_090 Hb_002928_090 Hb_000733_190--Hb_002928_090 Hb_001104_130 Hb_001104_130 Hb_000599_200--Hb_001104_130 Hb_000004_020 Hb_000004_020 Hb_000599_200--Hb_000004_020 Hb_000084_200 Hb_000084_200 Hb_000599_200--Hb_000084_200 Hb_000599_200--Hb_009680_020 Hb_000599_200--Hb_002928_090 Hb_001242_120--Hb_012733_040 Hb_005725_130 Hb_005725_130 Hb_001242_120--Hb_005725_130 Hb_001242_120--Hb_002928_090 Hb_002301_100 Hb_002301_100 Hb_001242_120--Hb_002301_100 Hb_001242_120--Hb_001051_050 Hb_003878_150 Hb_003878_150 Hb_001242_120--Hb_003878_150 Hb_001051_050--Hb_002928_090 Hb_000014_040 Hb_000014_040 Hb_001051_050--Hb_000014_040 Hb_000116_190 Hb_000116_190 Hb_001051_050--Hb_000116_190 Hb_000645_280 Hb_000645_280 Hb_001051_050--Hb_000645_280 Hb_007821_030 Hb_007821_030 Hb_001051_050--Hb_007821_030 Hb_017987_030 Hb_017987_030 Hb_009680_020--Hb_017987_030 Hb_000107_150 Hb_000107_150 Hb_009680_020--Hb_000107_150 Hb_000110_250 Hb_000110_250 Hb_009680_020--Hb_000110_250 Hb_000179_270 Hb_000179_270 Hb_009680_020--Hb_000179_270 Hb_002477_010 Hb_002477_010 Hb_009680_020--Hb_002477_010 Hb_001195_400 Hb_001195_400 Hb_012733_040--Hb_001195_400 Hb_012733_040--Hb_002301_100 Hb_000364_050 Hb_000364_050 Hb_012733_040--Hb_000364_050 Hb_004452_120 Hb_004452_120 Hb_012733_040--Hb_004452_120 Hb_003159_050 Hb_003159_050 Hb_012733_040--Hb_003159_050 Hb_002928_090--Hb_000014_040 Hb_002928_090--Hb_005725_130 Hb_000390_050 Hb_000390_050 Hb_002928_090--Hb_000390_050 Hb_009569_040 Hb_009569_040 Hb_002928_090--Hb_009569_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.351514 0.0936021 0.439655 0.824951 0.158868 0.306028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.328356 0.536573 0.150307 0.506528 0.879198

CAGE analysis