Hb_003336_030

Information

Type -
Description -
Location Contig3336: 34184-34690
Sequence    

Annotation

kegg
ID rcu:RCOM_1626870
description transcription factor, putative
nr
ID XP_002527258.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9SKX1
description Transcription factor IBH1 OS=Arabidopsis thaliana GN=IBH1 PE=1 SV=1
trembl
ID B9SMN9
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1626870 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35000: 33633-34824
cDNA
(Sanger)
(ID:Location)		 005_M10.ab1: 33969-34665 , 027_G09.ab1: 34177-34943 , 027_M02.ab1: 34004-34732 , 036_I19.ab1: 33633-34732 , 051_P15.ab1: 34575-34940

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003336_030 0.0 - - transcription factor, putative [Ricinus communis]
2 Hb_138585_050 0.1202623069 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
3 Hb_000320_180 0.1224238788 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
4 Hb_024714_050 0.12745101 - - hypothetical protein CICLE_v100188992mg, partial [Citrus clementina]
5 Hb_000210_220 0.1472481945 - - hypothetical protein POPTR_0006s22010g [Populus trichocarpa]
6 Hb_000272_140 0.1492285669 - - Protein bem46, putative [Ricinus communis]
7 Hb_000169_140 0.1495322157 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
8 Hb_028487_030 0.1532130624 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010582_010 0.154636787 - - hypothetical protein POPTR_0011s15670g [Populus trichocarpa]
10 Hb_001053_180 0.1551780954 - - protein binding protein, putative [Ricinus communis]
11 Hb_004317_040 0.1560835877 - - hypothetical protein POPTR_0006s22010g [Populus trichocarpa]
12 Hb_007520_010 0.1561266227 - - PREDICTED: uncharacterized protein LOC105640383 [Jatropha curcas]
13 Hb_002054_010 0.1563249706 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
14 Hb_000345_390 0.1566738651 - - hypothetical protein JCGZ_23349 [Jatropha curcas]
15 Hb_001491_010 0.1575516249 - - PREDICTED: uncharacterized protein LOC105649805 [Jatropha curcas]
16 Hb_000331_440 0.1635469712 - - hypothetical protein POPTR_0015s10290g [Populus trichocarpa]
17 Hb_003349_080 0.1649123688 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
18 Hb_000529_220 0.1650523886 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000735_130 0.1652655025 - - conserved hypothetical protein [Ricinus communis]
20 Hb_011671_390 0.1658165077 - - peptide methionine sulfoxide reductase A1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003336_030 Hb_003336_030 Hb_138585_050 Hb_138585_050 Hb_003336_030--Hb_138585_050 Hb_000320_180 Hb_000320_180 Hb_003336_030--Hb_000320_180 Hb_024714_050 Hb_024714_050 Hb_003336_030--Hb_024714_050 Hb_000210_220 Hb_000210_220 Hb_003336_030--Hb_000210_220 Hb_000272_140 Hb_000272_140 Hb_003336_030--Hb_000272_140 Hb_000169_140 Hb_000169_140 Hb_003336_030--Hb_000169_140 Hb_001491_010 Hb_001491_010 Hb_138585_050--Hb_001491_010 Hb_138585_050--Hb_000320_180 Hb_008554_070 Hb_008554_070 Hb_138585_050--Hb_008554_070 Hb_138585_050--Hb_000210_220 Hb_024714_010 Hb_024714_010 Hb_138585_050--Hb_024714_010 Hb_004871_040 Hb_004871_040 Hb_138585_050--Hb_004871_040 Hb_004459_040 Hb_004459_040 Hb_000320_180--Hb_004459_040 Hb_000320_180--Hb_024714_050 Hb_000042_200 Hb_000042_200 Hb_000320_180--Hb_000042_200 Hb_002687_170 Hb_002687_170 Hb_000320_180--Hb_002687_170 Hb_004846_090 Hb_004846_090 Hb_000320_180--Hb_004846_090 Hb_024714_050--Hb_004846_090 Hb_003349_080 Hb_003349_080 Hb_024714_050--Hb_003349_080 Hb_000318_160 Hb_000318_160 Hb_024714_050--Hb_000318_160 Hb_003050_280 Hb_003050_280 Hb_024714_050--Hb_003050_280 Hb_001083_020 Hb_001083_020 Hb_000210_220--Hb_001083_020 Hb_000210_220--Hb_001491_010 Hb_000210_220--Hb_003349_080 Hb_061802_010 Hb_061802_010 Hb_000210_220--Hb_061802_010 Hb_000979_200 Hb_000979_200 Hb_000210_220--Hb_000979_200 Hb_002878_010 Hb_002878_010 Hb_000272_140--Hb_002878_010 Hb_002918_290 Hb_002918_290 Hb_000272_140--Hb_002918_290 Hb_000705_290 Hb_000705_290 Hb_000272_140--Hb_000705_290 Hb_001953_090 Hb_001953_090 Hb_000272_140--Hb_001953_090 Hb_000272_140--Hb_000042_200 Hb_000322_140 Hb_000322_140 Hb_000272_140--Hb_000322_140 Hb_000169_140--Hb_000210_220 Hb_000169_140--Hb_003349_080 Hb_000529_220 Hb_000529_220 Hb_000169_140--Hb_000529_220 Hb_000997_360 Hb_000997_360 Hb_000169_140--Hb_000997_360 Hb_028487_030 Hb_028487_030 Hb_000169_140--Hb_028487_030 Hb_002260_030 Hb_002260_030 Hb_000169_140--Hb_002260_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.7488 3.64843 35.6316 27.1397 35.2201 44.8646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
165.438 113.688 87.7292 5.56321 74.7993

CAGE analysis