Hb_001369_240

Information

Type -
Description -
Location Contig1369: 258313-259704
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_240 0.0 - - -
2 Hb_004108_090 0.1696752146 - - PREDICTED: uncharacterized protein LOC105650231 [Jatropha curcas]
3 Hb_002600_100 0.1761036143 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]
4 Hb_000575_020 0.1827814234 - - PREDICTED: copper-transporting ATPase PAA1, chloroplastic [Jatropha curcas]
5 Hb_011004_010 0.1837222963 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
6 Hb_004738_010 0.1918720121 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
7 Hb_026428_010 0.1929998665 - - copper transport protein ATOX1 [Hevea brasiliensis]
8 Hb_001035_040 0.1963410882 - - unnamed protein product [Coffea canephora]
9 Hb_010710_020 0.1966328825 - - PREDICTED: uncharacterized protein LOC103322096 [Prunus mume]
10 Hb_004965_070 0.1976716155 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
11 Hb_002119_120 0.198254048 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
12 Hb_000700_130 0.1990958182 - - PREDICTED: uncharacterized protein At4g13200, chloroplastic [Jatropha curcas]
13 Hb_071947_010 0.1997022827 - - -
14 Hb_004429_150 0.2017264736 - - -
15 Hb_000260_580 0.2029814732 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000032_040 0.2043897686 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
17 Hb_007140_020 0.2060226738 - - hypothetical protein CICLE_v10008419mg [Citrus clementina]
18 Hb_007120_070 0.2063203464 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
19 Hb_006745_060 0.2065581141 - - -
20 Hb_002027_400 0.2084877729 - - PREDICTED: auxin response factor 23-like [Jatropha curcas]

Gene co-expression network

sample Hb_001369_240 Hb_001369_240 Hb_004108_090 Hb_004108_090 Hb_001369_240--Hb_004108_090 Hb_002600_100 Hb_002600_100 Hb_001369_240--Hb_002600_100 Hb_000575_020 Hb_000575_020 Hb_001369_240--Hb_000575_020 Hb_011004_010 Hb_011004_010 Hb_001369_240--Hb_011004_010 Hb_004738_010 Hb_004738_010 Hb_001369_240--Hb_004738_010 Hb_026428_010 Hb_026428_010 Hb_001369_240--Hb_026428_010 Hb_004108_090--Hb_000575_020 Hb_004108_090--Hb_011004_010 Hb_007520_010 Hb_007520_010 Hb_004108_090--Hb_007520_010 Hb_107504_010 Hb_107504_010 Hb_004108_090--Hb_107504_010 Hb_001035_040 Hb_001035_040 Hb_004108_090--Hb_001035_040 Hb_020419_010 Hb_020419_010 Hb_002600_100--Hb_020419_010 Hb_000487_310 Hb_000487_310 Hb_002600_100--Hb_000487_310 Hb_014720_080 Hb_014720_080 Hb_002600_100--Hb_014720_080 Hb_002600_100--Hb_004738_010 Hb_002540_030 Hb_002540_030 Hb_002600_100--Hb_002540_030 Hb_002119_120 Hb_002119_120 Hb_002600_100--Hb_002119_120 Hb_000575_020--Hb_011004_010 Hb_000032_040 Hb_000032_040 Hb_000575_020--Hb_000032_040 Hb_001507_070 Hb_001507_070 Hb_000575_020--Hb_001507_070 Hb_000742_270 Hb_000742_270 Hb_000575_020--Hb_000742_270 Hb_000012_130 Hb_000012_130 Hb_000575_020--Hb_000012_130 Hb_011004_010--Hb_000032_040 Hb_011004_010--Hb_001507_070 Hb_011004_010--Hb_000742_270 Hb_003371_100 Hb_003371_100 Hb_011004_010--Hb_003371_100 Hb_000175_610 Hb_000175_610 Hb_011004_010--Hb_000175_610 Hb_004738_010--Hb_002119_120 Hb_001863_480 Hb_001863_480 Hb_004738_010--Hb_001863_480 Hb_000907_090 Hb_000907_090 Hb_004738_010--Hb_000907_090 Hb_001439_170 Hb_001439_170 Hb_004738_010--Hb_001439_170 Hb_001711_030 Hb_001711_030 Hb_004738_010--Hb_001711_030 Hb_004738_010--Hb_000032_040 Hb_000803_050 Hb_000803_050 Hb_026428_010--Hb_000803_050 Hb_026428_010--Hb_001035_040 Hb_007120_070 Hb_007120_070 Hb_026428_010--Hb_007120_070 Hb_026428_010--Hb_000175_610 Hb_000188_130 Hb_000188_130 Hb_026428_010--Hb_000188_130 Hb_000107_070 Hb_000107_070 Hb_026428_010--Hb_000107_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.93971 0.564882 0.12365 0.213159 1.12207 0.404186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.32838 4.18705 2.9696 1.56833 1.52303

CAGE analysis