Hb_020419_010

Information

Type -
Description -
Location Contig20419: 3689-5221
Sequence    

Annotation

kegg
ID pmum:103327470
description putative ribonuclease H protein At1g65750
nr
ID XP_008228034.1
description PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20928: 3721-5276
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020419_010 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
2 Hb_004678_050 0.0873208682 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase [Jatropha curcas]
3 Hb_002600_100 0.1000184916 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]
4 Hb_014720_080 0.1041571151 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
5 Hb_000496_060 0.1052134525 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
6 Hb_002411_200 0.1107494015 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000025_120 0.1125712754 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
8 Hb_000625_070 0.1127030786 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
9 Hb_002216_040 0.1143751532 - - PREDICTED: protein PRD1 [Jatropha curcas]
10 Hb_000503_050 0.1159560078 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Gossypium raimondii]
11 Hb_002301_230 0.1176361635 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
12 Hb_148209_110 0.1191197919 - - putative polyol transported protein 2 [Hevea brasiliensis]
13 Hb_000010_470 0.1191670546 - - Galactose oxidase/kelch repeat superfamily protein isoform 2 [Theobroma cacao]
14 Hb_000111_360 0.1224205391 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000223_150 0.1233292675 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
16 Hb_000174_070 0.1234927876 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
17 Hb_001881_020 0.1241003251 - - clathrin binding protein, putative [Ricinus communis]
18 Hb_000146_020 0.1241358286 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
19 Hb_000834_270 0.1243982597 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
20 Hb_000030_100 0.1244112737 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_020419_010 Hb_020419_010 Hb_004678_050 Hb_004678_050 Hb_020419_010--Hb_004678_050 Hb_002600_100 Hb_002600_100 Hb_020419_010--Hb_002600_100 Hb_014720_080 Hb_014720_080 Hb_020419_010--Hb_014720_080 Hb_000496_060 Hb_000496_060 Hb_020419_010--Hb_000496_060 Hb_002411_200 Hb_002411_200 Hb_020419_010--Hb_002411_200 Hb_000025_120 Hb_000025_120 Hb_020419_010--Hb_000025_120 Hb_001360_050 Hb_001360_050 Hb_004678_050--Hb_001360_050 Hb_004678_050--Hb_000025_120 Hb_012675_060 Hb_012675_060 Hb_004678_050--Hb_012675_060 Hb_000834_270 Hb_000834_270 Hb_004678_050--Hb_000834_270 Hb_003020_230 Hb_003020_230 Hb_004678_050--Hb_003020_230 Hb_000487_310 Hb_000487_310 Hb_002600_100--Hb_000487_310 Hb_002600_100--Hb_014720_080 Hb_004738_010 Hb_004738_010 Hb_002600_100--Hb_004738_010 Hb_002540_030 Hb_002540_030 Hb_002600_100--Hb_002540_030 Hb_002119_120 Hb_002119_120 Hb_002600_100--Hb_002119_120 Hb_001722_100 Hb_001722_100 Hb_014720_080--Hb_001722_100 Hb_014720_080--Hb_000025_120 Hb_021650_030 Hb_021650_030 Hb_014720_080--Hb_021650_030 Hb_014720_080--Hb_002540_030 Hb_000146_020 Hb_000146_020 Hb_014720_080--Hb_000146_020 Hb_014720_080--Hb_000834_270 Hb_000496_060--Hb_000025_120 Hb_005432_030 Hb_005432_030 Hb_000496_060--Hb_005432_030 Hb_003175_040 Hb_003175_040 Hb_000496_060--Hb_003175_040 Hb_117134_010 Hb_117134_010 Hb_000496_060--Hb_117134_010 Hb_000496_060--Hb_014720_080 Hb_001833_110 Hb_001833_110 Hb_000496_060--Hb_001833_110 Hb_002411_200--Hb_021650_030 Hb_000086_570 Hb_000086_570 Hb_002411_200--Hb_000086_570 Hb_000091_090 Hb_000091_090 Hb_002411_200--Hb_000091_090 Hb_002411_200--Hb_014720_080 Hb_001881_020 Hb_001881_020 Hb_002411_200--Hb_001881_020 Hb_020178_070 Hb_020178_070 Hb_002411_200--Hb_020178_070 Hb_000347_410 Hb_000347_410 Hb_000025_120--Hb_000347_410 Hb_001105_070 Hb_001105_070 Hb_000025_120--Hb_001105_070 Hb_000025_120--Hb_000146_020 Hb_000025_120--Hb_000834_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.32885 0.462433 0.0618112 0.413624 0.654058 0.938622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.37768 1.65326 2.03056 0.939753 0.562155

CAGE analysis