Hb_001936_140

Information

Type -
Description -
Location Contig1936: 125828-128835
Sequence    

Annotation

kegg
ID rcu:RCOM_0529250
description ATP-citrate synthase, putative (EC:6.2.1.5)
nr
ID XP_012085431.1
description PREDICTED: ATP-citrate synthase alpha chain protein 1 [Jatropha curcas]
swissprot
ID Q9SGY2
description ATP-citrate synthase alpha chain protein 1 OS=Arabidopsis thaliana GN=ACLA-1 PE=1 SV=1
trembl
ID A0A067K4A3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17777 PE=4 SV=1
Gene Ontology
ID GO:0003878
description atp-citrate synthase alpha chain protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001936_140 0.0 - - PREDICTED: ATP-citrate synthase alpha chain protein 1 [Jatropha curcas]
2 Hb_107504_010 0.0684977423 - - -
3 Hb_012799_020 0.1599515372 - - metal ion binding protein, putative [Ricinus communis]
4 Hb_054074_010 0.1918880012 - - PREDICTED: uncharacterized protein LOC105645601 [Jatropha curcas]
5 Hb_000567_280 0.1989963813 - - PREDICTED: uncharacterized protein At4g06598-like [Populus euphratica]
6 Hb_004650_100 0.2000682708 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
7 Hb_006570_070 0.2161146206 - - cyclophilin [Hevea brasiliensis]
8 Hb_002918_040 0.2209043305 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
9 Hb_021056_010 0.2212285956 - - unnamed protein product [Vitis vinifera]
10 Hb_000091_100 0.2214248106 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000453_300 0.225628313 - - latex cystatin [Hevea brasiliensis]
12 Hb_004108_090 0.2257174447 - - PREDICTED: uncharacterized protein LOC105650231 [Jatropha curcas]
13 Hb_002835_220 0.2269029427 - - PREDICTED: MATE efflux family protein 7 [Vitis vinifera]
14 Hb_000007_040 0.2280534789 - - hypothetical protein MIMGU_mgv1a017616mg [Erythranthe guttata]
15 Hb_000566_020 0.2296726283 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
16 Hb_001035_040 0.2305004723 - - unnamed protein product [Coffea canephora]
17 Hb_001304_140 0.2306521591 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
18 Hb_104010_010 0.2341423425 - - hypothetical protein JCGZ_26423 [Jatropha curcas]
19 Hb_003581_300 0.2348456415 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
20 Hb_023386_010 0.2359054961 - - PREDICTED: histidine triad nucleotide-binding protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001936_140 Hb_001936_140 Hb_107504_010 Hb_107504_010 Hb_001936_140--Hb_107504_010 Hb_012799_020 Hb_012799_020 Hb_001936_140--Hb_012799_020 Hb_054074_010 Hb_054074_010 Hb_001936_140--Hb_054074_010 Hb_000567_280 Hb_000567_280 Hb_001936_140--Hb_000567_280 Hb_004650_100 Hb_004650_100 Hb_001936_140--Hb_004650_100 Hb_006570_070 Hb_006570_070 Hb_001936_140--Hb_006570_070 Hb_107504_010--Hb_012799_020 Hb_002918_040 Hb_002918_040 Hb_107504_010--Hb_002918_040 Hb_004108_090 Hb_004108_090 Hb_107504_010--Hb_004108_090 Hb_107504_010--Hb_054074_010 Hb_000453_300 Hb_000453_300 Hb_107504_010--Hb_000453_300 Hb_012799_020--Hb_000453_300 Hb_012799_020--Hb_002918_040 Hb_004209_030 Hb_004209_030 Hb_012799_020--Hb_004209_030 Hb_000792_120 Hb_000792_120 Hb_012799_020--Hb_000792_120 Hb_023386_010 Hb_023386_010 Hb_054074_010--Hb_023386_010 Hb_001304_140 Hb_001304_140 Hb_054074_010--Hb_001304_140 Hb_010582_010 Hb_010582_010 Hb_054074_010--Hb_010582_010 Hb_000820_130 Hb_000820_130 Hb_054074_010--Hb_000820_130 Hb_008699_020 Hb_008699_020 Hb_054074_010--Hb_008699_020 Hb_001604_030 Hb_001604_030 Hb_054074_010--Hb_001604_030 Hb_003050_070 Hb_003050_070 Hb_000567_280--Hb_003050_070 Hb_159191_010 Hb_159191_010 Hb_000567_280--Hb_159191_010 Hb_104010_010 Hb_104010_010 Hb_000567_280--Hb_104010_010 Hb_000091_100 Hb_000091_100 Hb_000567_280--Hb_000091_100 Hb_001741_090 Hb_001741_090 Hb_000567_280--Hb_001741_090 Hb_002835_220 Hb_002835_220 Hb_000567_280--Hb_002835_220 Hb_000922_100 Hb_000922_100 Hb_004650_100--Hb_000922_100 Hb_002659_040 Hb_002659_040 Hb_004650_100--Hb_002659_040 Hb_001700_020 Hb_001700_020 Hb_004650_100--Hb_001700_020 Hb_001427_230 Hb_001427_230 Hb_004650_100--Hb_001427_230 Hb_183086_040 Hb_183086_040 Hb_004650_100--Hb_183086_040 Hb_000007_040 Hb_000007_040 Hb_004650_100--Hb_000007_040 Hb_030565_130 Hb_030565_130 Hb_006570_070--Hb_030565_130 Hb_001153_150 Hb_001153_150 Hb_006570_070--Hb_001153_150 Hb_112064_020 Hb_112064_020 Hb_006570_070--Hb_112064_020 Hb_000914_170 Hb_000914_170 Hb_006570_070--Hb_000914_170 Hb_001373_150 Hb_001373_150 Hb_006570_070--Hb_001373_150 Hb_002473_110 Hb_002473_110 Hb_006570_070--Hb_002473_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.002 9.14003 31.3535 68.2825 52.4088 32.9509
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
761.436 216.496 78.0247 78.4918 44.8243

CAGE analysis