Hb_001045_040

Information

Type -
Description -
Location Contig1045: 51870-55041
Sequence    

Annotation

kegg
ID pop:POPTR_0017s09760g
description hypothetical protein
nr
ID XP_012070173.1
description PREDICTED: carbonyl reductase [NADPH] 2 [Jatropha curcas]
swissprot
ID Q9LBG2
description Levodione reductase OS=Leifsonia aquatica GN=lvr PE=1 SV=1
trembl
ID A0A067LD15
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10102 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01581: 52135-54957
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001045_040 0.0 - - PREDICTED: carbonyl reductase [NADPH] 2 [Jatropha curcas]
2 Hb_002936_080 0.1831562389 - - Protein bem46, putative [Ricinus communis]
3 Hb_000329_550 0.1841583569 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 8 [Jatropha curcas]
4 Hb_008948_100 0.1917866838 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
5 Hb_000676_340 0.2015237673 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_001252_220 0.204503035 - - PREDICTED: uncharacterized protein LOC105640647 [Jatropha curcas]
7 Hb_003462_160 0.2051203033 transcription factor TF Family: GNAT predicted protein [Arabidopsis lyrata subsp. lyrata]
8 Hb_004672_030 0.2106218279 - - proline oxidase [Manihot esculenta]
9 Hb_000031_080 0.211192257 - - PREDICTED: uncharacterized protein LOC105637482 [Jatropha curcas]
10 Hb_002774_050 0.2115164686 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
11 Hb_000742_280 0.2123516298 - - ATP binding protein, putative [Ricinus communis]
12 Hb_014834_010 0.2127647583 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4 [Jatropha curcas]
13 Hb_000805_110 0.2131848198 - - PREDICTED: uncharacterized protein C24B11.05 [Jatropha curcas]
14 Hb_011021_040 0.2140497104 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
15 Hb_001863_130 0.2158171528 - - hypothetical protein ZEAMMB73_433257, partial [Zea mays]
16 Hb_003849_150 0.2170095868 - - PREDICTED: uncharacterized protein LOC105644698 [Jatropha curcas]
17 Hb_004162_260 0.2170586966 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
18 Hb_000069_700 0.217994718 - - hypothetical protein B456_005G003200 [Gossypium raimondii]
19 Hb_001114_080 0.2181535171 - - hypothetical protein PRUPE_ppa019021mg, partial [Prunus persica]
20 Hb_024074_010 0.2212281892 - - PREDICTED: cytochrome c [Jatropha curcas]

Gene co-expression network

sample Hb_001045_040 Hb_001045_040 Hb_002936_080 Hb_002936_080 Hb_001045_040--Hb_002936_080 Hb_000329_550 Hb_000329_550 Hb_001045_040--Hb_000329_550 Hb_008948_100 Hb_008948_100 Hb_001045_040--Hb_008948_100 Hb_000676_340 Hb_000676_340 Hb_001045_040--Hb_000676_340 Hb_001252_220 Hb_001252_220 Hb_001045_040--Hb_001252_220 Hb_003462_160 Hb_003462_160 Hb_001045_040--Hb_003462_160 Hb_004162_260 Hb_004162_260 Hb_002936_080--Hb_004162_260 Hb_000530_120 Hb_000530_120 Hb_002936_080--Hb_000530_120 Hb_004672_030 Hb_004672_030 Hb_002936_080--Hb_004672_030 Hb_002609_040 Hb_002609_040 Hb_002936_080--Hb_002609_040 Hb_001823_060 Hb_001823_060 Hb_002936_080--Hb_001823_060 Hb_098533_020 Hb_098533_020 Hb_000329_550--Hb_098533_020 Hb_118282_010 Hb_118282_010 Hb_000329_550--Hb_118282_010 Hb_000394_110 Hb_000394_110 Hb_000329_550--Hb_000394_110 Hb_000189_540 Hb_000189_540 Hb_000329_550--Hb_000189_540 Hb_001959_010 Hb_001959_010 Hb_000329_550--Hb_001959_010 Hb_028487_030 Hb_028487_030 Hb_008948_100--Hb_028487_030 Hb_029904_030 Hb_029904_030 Hb_008948_100--Hb_029904_030 Hb_000027_150 Hb_000027_150 Hb_008948_100--Hb_000027_150 Hb_002774_050 Hb_002774_050 Hb_008948_100--Hb_002774_050 Hb_001357_120 Hb_001357_120 Hb_008948_100--Hb_001357_120 Hb_002260_030 Hb_002260_030 Hb_008948_100--Hb_002260_030 Hb_006018_060 Hb_006018_060 Hb_000676_340--Hb_006018_060 Hb_000676_340--Hb_002774_050 Hb_000676_340--Hb_002260_030 Hb_003581_300 Hb_003581_300 Hb_000676_340--Hb_003581_300 Hb_001123_210 Hb_001123_210 Hb_000676_340--Hb_001123_210 Hb_000178_120 Hb_000178_120 Hb_000676_340--Hb_000178_120 Hb_002260_010 Hb_002260_010 Hb_001252_220--Hb_002260_010 Hb_012022_140 Hb_012022_140 Hb_001252_220--Hb_012022_140 Hb_004057_010 Hb_004057_010 Hb_001252_220--Hb_004057_010 Hb_024074_010 Hb_024074_010 Hb_001252_220--Hb_024074_010 Hb_000005_300 Hb_000005_300 Hb_001252_220--Hb_000005_300 Hb_003020_150 Hb_003020_150 Hb_001252_220--Hb_003020_150 Hb_001558_080 Hb_001558_080 Hb_003462_160--Hb_001558_080 Hb_003462_160--Hb_001252_220 Hb_002060_010 Hb_002060_010 Hb_003462_160--Hb_002060_010 Hb_003462_160--Hb_002260_010 Hb_000155_160 Hb_000155_160 Hb_003462_160--Hb_000155_160 Hb_006256_030 Hb_006256_030 Hb_003462_160--Hb_006256_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.8917 20.9431 34.5971 20.2185 0.929778 1.37967
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.2465 55.9862 36.2986 4.16509 28.3927

CAGE analysis