Hb_000394_110

Information

Type transcription factor
Description TF Family: MYB
Location Contig394: 102401-103879
Sequence    

Annotation

kegg
ID rcu:RCOM_0176920
description r2r3-myb transcription factor, putative
nr
ID XP_002534486.1
description r2r3-myb transcription factor, putative [Ricinus communis]
swissprot
ID Q38851
description Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1
trembl
ID B9T8B7
description R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_0176920 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription repressor myb6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39461: 102487-103859
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000394_110 0.0 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
2 Hb_000510_230 0.1515774301 - - PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]
3 Hb_127194_010 0.1602546945 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
4 Hb_000057_140 0.1627923076 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
5 Hb_001959_010 0.1724240679 - - myosin XI, putative [Ricinus communis]
6 Hb_007558_020 0.1789306897 - - hypothetical protein JCGZ_17631 [Jatropha curcas]
7 Hb_098533_020 0.1830778031 - - PREDICTED: zinc finger AN1 domain-containing stress-associated protein 12 [Jatropha curcas]
8 Hb_008768_020 0.1861326062 - - PREDICTED: uncharacterized protein LOC105639378 [Jatropha curcas]
9 Hb_001199_040 0.1873695156 - - unnamed protein product [Coffea canephora]
10 Hb_000025_370 0.1899277389 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
11 Hb_003147_070 0.192026835 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
12 Hb_000529_150 0.1948250539 - - protein with unknown function [Ricinus communis]
13 Hb_002671_090 0.197471539 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
14 Hb_002849_140 0.198649886 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
15 Hb_004920_070 0.2009120678 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
16 Hb_000329_550 0.2017196024 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 8 [Jatropha curcas]
17 Hb_000211_030 0.2054927018 - - sugar transporter, putative [Ricinus communis]
18 Hb_005181_160 0.211690142 - - PREDICTED: uncharacterized protein LOC105643546 [Jatropha curcas]
19 Hb_002686_180 0.2134891002 - - PREDICTED: early nodulin-93-like [Populus euphratica]
20 Hb_000805_110 0.2142886016 - - PREDICTED: uncharacterized protein C24B11.05 [Jatropha curcas]

Gene co-expression network

sample Hb_000394_110 Hb_000394_110 Hb_000510_230 Hb_000510_230 Hb_000394_110--Hb_000510_230 Hb_127194_010 Hb_127194_010 Hb_000394_110--Hb_127194_010 Hb_000057_140 Hb_000057_140 Hb_000394_110--Hb_000057_140 Hb_001959_010 Hb_001959_010 Hb_000394_110--Hb_001959_010 Hb_007558_020 Hb_007558_020 Hb_000394_110--Hb_007558_020 Hb_098533_020 Hb_098533_020 Hb_000394_110--Hb_098533_020 Hb_003147_070 Hb_003147_070 Hb_000510_230--Hb_003147_070 Hb_000529_150 Hb_000529_150 Hb_000510_230--Hb_000529_150 Hb_004920_070 Hb_004920_070 Hb_000510_230--Hb_004920_070 Hb_008768_020 Hb_008768_020 Hb_000510_230--Hb_008768_020 Hb_000069_240 Hb_000069_240 Hb_000510_230--Hb_000069_240 Hb_000321_160 Hb_000321_160 Hb_127194_010--Hb_000321_160 Hb_000805_110 Hb_000805_110 Hb_127194_010--Hb_000805_110 Hb_004324_300 Hb_004324_300 Hb_127194_010--Hb_004324_300 Hb_000475_040 Hb_000475_040 Hb_127194_010--Hb_000475_040 Hb_002028_140 Hb_002028_140 Hb_127194_010--Hb_002028_140 Hb_001199_040 Hb_001199_040 Hb_000057_140--Hb_001199_040 Hb_008226_080 Hb_008226_080 Hb_000057_140--Hb_008226_080 Hb_012340_060 Hb_012340_060 Hb_000057_140--Hb_012340_060 Hb_002701_010 Hb_002701_010 Hb_000057_140--Hb_002701_010 Hb_005181_160 Hb_005181_160 Hb_000057_140--Hb_005181_160 Hb_004005_020 Hb_004005_020 Hb_000057_140--Hb_004005_020 Hb_002671_090 Hb_002671_090 Hb_001959_010--Hb_002671_090 Hb_001114_080 Hb_001114_080 Hb_001959_010--Hb_001114_080 Hb_000025_370 Hb_000025_370 Hb_001959_010--Hb_000025_370 Hb_009111_020 Hb_009111_020 Hb_001959_010--Hb_009111_020 Hb_000300_700 Hb_000300_700 Hb_001959_010--Hb_000300_700 Hb_001771_080 Hb_001771_080 Hb_007558_020--Hb_001771_080 Hb_000343_180 Hb_000343_180 Hb_007558_020--Hb_000343_180 Hb_002849_140 Hb_002849_140 Hb_007558_020--Hb_002849_140 Hb_006907_080 Hb_006907_080 Hb_007558_020--Hb_006907_080 Hb_140049_010 Hb_140049_010 Hb_007558_020--Hb_140049_010 Hb_000031_080 Hb_000031_080 Hb_098533_020--Hb_000031_080 Hb_000189_540 Hb_000189_540 Hb_098533_020--Hb_000189_540 Hb_000465_510 Hb_000465_510 Hb_098533_020--Hb_000465_510 Hb_000152_100 Hb_000152_100 Hb_098533_020--Hb_000152_100 Hb_000340_500 Hb_000340_500 Hb_098533_020--Hb_000340_500 Hb_005015_030 Hb_005015_030 Hb_098533_020--Hb_005015_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.24705 15.9179 30.42 7.98134 0.621755 1.04038
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.8603 27.5693 14.9014 6.90583 1.60871

CAGE analysis