Hb_001199_040

Information

Type -
Description -
Location Contig1199: 76621-77736
Sequence    

Annotation

kegg
ID egr:104453384
description ubiquitin fusion degradation protein 1 homolog
nr
ID CDP09078.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q9ES53
description Ubiquitin fusion degradation protein 1 homolog OS=Rattus norvegicus GN=Ufd1l PE=1 SV=1
trembl
ID A0A068UN78
description Coffea canephora DH200=94 genomic scaffold, scaffold_36 OS=Coffea canephora GN=GSCOC_T00028270001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001199_040 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_008226_080 0.1283327537 - - Protein LRP16, putative [Ricinus communis]
3 Hb_000057_140 0.1321722623 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
4 Hb_061195_020 0.1683715122 - - PREDICTED: uncharacterized protein LOC101990594 [Microtus ochrogaster]
5 Hb_007850_080 0.16974992 - - PREDICTED: auxilin-like protein 1 isoform X1 [Jatropha curcas]
6 Hb_004453_080 0.1717872995 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
7 Hb_000465_230 0.1783868704 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
8 Hb_003442_070 0.1806443909 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
9 Hb_011618_060 0.1820563863 - - PREDICTED: DNA-repair protein XRCC1 [Jatropha curcas]
10 Hb_000394_110 0.1873695156 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
11 Hb_002701_010 0.1903285551 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
12 Hb_000948_080 0.1908787814 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
13 Hb_001675_030 0.1918299188 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002374_380 0.1922527223 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
15 Hb_000031_080 0.1948581206 - - PREDICTED: uncharacterized protein LOC105637482 [Jatropha curcas]
16 Hb_003020_150 0.1950763835 - - tropinone reductase, putative [Ricinus communis]
17 Hb_013399_050 0.1971089328 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like isoform X2 [Jatropha curcas]
18 Hb_000975_360 0.1985555578 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002042_130 0.19933302 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
20 Hb_001341_100 0.2006798724 - - hypothetical protein JCGZ_05568 [Jatropha curcas]

Gene co-expression network

sample Hb_001199_040 Hb_001199_040 Hb_008226_080 Hb_008226_080 Hb_001199_040--Hb_008226_080 Hb_000057_140 Hb_000057_140 Hb_001199_040--Hb_000057_140 Hb_061195_020 Hb_061195_020 Hb_001199_040--Hb_061195_020 Hb_007850_080 Hb_007850_080 Hb_001199_040--Hb_007850_080 Hb_004453_080 Hb_004453_080 Hb_001199_040--Hb_004453_080 Hb_000465_230 Hb_000465_230 Hb_001199_040--Hb_000465_230 Hb_002016_080 Hb_002016_080 Hb_008226_080--Hb_002016_080 Hb_008226_080--Hb_007850_080 Hb_007192_100 Hb_007192_100 Hb_008226_080--Hb_007192_100 Hb_000413_280 Hb_000413_280 Hb_008226_080--Hb_000413_280 Hb_008226_080--Hb_061195_020 Hb_000922_040 Hb_000922_040 Hb_008226_080--Hb_000922_040 Hb_000057_140--Hb_008226_080 Hb_012340_060 Hb_012340_060 Hb_000057_140--Hb_012340_060 Hb_002701_010 Hb_002701_010 Hb_000057_140--Hb_002701_010 Hb_005181_160 Hb_005181_160 Hb_000057_140--Hb_005181_160 Hb_004005_020 Hb_004005_020 Hb_000057_140--Hb_004005_020 Hb_015807_100 Hb_015807_100 Hb_061195_020--Hb_015807_100 Hb_029904_030 Hb_029904_030 Hb_061195_020--Hb_029904_030 Hb_061195_020--Hb_000465_230 Hb_061195_020--Hb_007850_080 Hb_000525_020 Hb_000525_020 Hb_061195_020--Hb_000525_020 Hb_033642_080 Hb_033642_080 Hb_061195_020--Hb_033642_080 Hb_005656_100 Hb_005656_100 Hb_007850_080--Hb_005656_100 Hb_003442_070 Hb_003442_070 Hb_007850_080--Hb_003442_070 Hb_007850_080--Hb_033642_080 Hb_007850_080--Hb_004453_080 Hb_002631_180 Hb_002631_180 Hb_007850_080--Hb_002631_180 Hb_001433_110 Hb_001433_110 Hb_004453_080--Hb_001433_110 Hb_000252_110 Hb_000252_110 Hb_004453_080--Hb_000252_110 Hb_028487_170 Hb_028487_170 Hb_004453_080--Hb_028487_170 Hb_004453_080--Hb_003442_070 Hb_004453_080--Hb_008226_080 Hb_013399_050 Hb_013399_050 Hb_000465_230--Hb_013399_050 Hb_002217_020 Hb_002217_020 Hb_000465_230--Hb_002217_020 Hb_065525_090 Hb_065525_090 Hb_000465_230--Hb_065525_090 Hb_001825_060 Hb_001825_060 Hb_000465_230--Hb_001825_060 Hb_012107_060 Hb_012107_060 Hb_000465_230--Hb_012107_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0918798 0.235553 0.180247 0.128633 0 0.0207006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.265674 0.348287 0.193614 0.181634 0.0717733

CAGE analysis