Hb_000057_140

Information

Type -
Description -
Location Contig57: 205785-208012
Sequence    

Annotation

kegg
ID rcu:RCOM_1494540
description Mitochondrial carnitine/acylcarnitine carrier protein, putative
nr
ID XP_002516060.1
description Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
swissprot
ID Q9CA93
description Mitochondrial arginine transporter BAC2 OS=Arabidopsis thaliana GN=BAC2 PE=1 SV=1
trembl
ID B9RQP1
description Mitochondrial carnitine/acylcarnitine carrier protein, putative OS=Ricinus communis GN=RCOM_1494540 PE=3 SV=1
Gene Ontology
ID GO:0055085
description mitochondrial substrate carrier family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49302: 205763-207951 , PASA_asmbl_49303: 208037-208238
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000057_140 0.0 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
2 Hb_001199_040 0.1321722623 - - unnamed protein product [Coffea canephora]
3 Hb_008226_080 0.1439293831 - - Protein LRP16, putative [Ricinus communis]
4 Hb_012340_060 0.1456892132 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002701_010 0.1461842018 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
6 Hb_005181_160 0.1567678618 - - PREDICTED: uncharacterized protein LOC105643546 [Jatropha curcas]
7 Hb_004005_020 0.1619647903 - - PREDICTED: nudix hydrolase 20, chloroplastic-like isoform X1 [Jatropha curcas]
8 Hb_000394_110 0.1627923076 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
9 Hb_000225_060 0.1673804074 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
10 Hb_000025_370 0.168001839 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
11 Hb_008768_020 0.1687339159 - - PREDICTED: uncharacterized protein LOC105639378 [Jatropha curcas]
12 Hb_022318_020 0.1691504731 - - hypothetical protein JCGZ_00541 [Jatropha curcas]
13 Hb_002060_010 0.169494379 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
14 Hb_000723_230 0.1701690121 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
15 Hb_000529_280 0.1704822326 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
16 Hb_002671_090 0.1727851151 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
17 Hb_004705_080 0.1768334129 transcription factor TF Family: ARF transcription factor, putative [Ricinus communis]
18 Hb_000465_230 0.178777764 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
19 Hb_000465_300 0.1788792202 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
20 Hb_009620_020 0.1794750973 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000057_140 Hb_000057_140 Hb_001199_040 Hb_001199_040 Hb_000057_140--Hb_001199_040 Hb_008226_080 Hb_008226_080 Hb_000057_140--Hb_008226_080 Hb_012340_060 Hb_012340_060 Hb_000057_140--Hb_012340_060 Hb_002701_010 Hb_002701_010 Hb_000057_140--Hb_002701_010 Hb_005181_160 Hb_005181_160 Hb_000057_140--Hb_005181_160 Hb_004005_020 Hb_004005_020 Hb_000057_140--Hb_004005_020 Hb_001199_040--Hb_008226_080 Hb_061195_020 Hb_061195_020 Hb_001199_040--Hb_061195_020 Hb_007850_080 Hb_007850_080 Hb_001199_040--Hb_007850_080 Hb_004453_080 Hb_004453_080 Hb_001199_040--Hb_004453_080 Hb_000465_230 Hb_000465_230 Hb_001199_040--Hb_000465_230 Hb_002016_080 Hb_002016_080 Hb_008226_080--Hb_002016_080 Hb_008226_080--Hb_007850_080 Hb_007192_100 Hb_007192_100 Hb_008226_080--Hb_007192_100 Hb_000413_280 Hb_000413_280 Hb_008226_080--Hb_000413_280 Hb_008226_080--Hb_061195_020 Hb_000922_040 Hb_000922_040 Hb_008226_080--Hb_000922_040 Hb_001105_110 Hb_001105_110 Hb_012340_060--Hb_001105_110 Hb_168319_010 Hb_168319_010 Hb_012340_060--Hb_168319_010 Hb_002232_430 Hb_002232_430 Hb_012340_060--Hb_002232_430 Hb_027654_080 Hb_027654_080 Hb_012340_060--Hb_027654_080 Hb_004429_020 Hb_004429_020 Hb_012340_060--Hb_004429_020 Hb_001341_100 Hb_001341_100 Hb_012340_060--Hb_001341_100 Hb_022318_020 Hb_022318_020 Hb_002701_010--Hb_022318_020 Hb_163256_020 Hb_163256_020 Hb_002701_010--Hb_163256_020 Hb_006355_040 Hb_006355_040 Hb_002701_010--Hb_006355_040 Hb_000424_200 Hb_000424_200 Hb_002701_010--Hb_000424_200 Hb_000099_150 Hb_000099_150 Hb_002701_010--Hb_000099_150 Hb_002307_310 Hb_002307_310 Hb_002701_010--Hb_002307_310 Hb_000025_370 Hb_000025_370 Hb_005181_160--Hb_000025_370 Hb_001221_330 Hb_001221_330 Hb_005181_160--Hb_001221_330 Hb_007741_130 Hb_007741_130 Hb_005181_160--Hb_007741_130 Hb_005181_160--Hb_004005_020 Hb_000368_030 Hb_000368_030 Hb_005181_160--Hb_000368_030 Hb_002249_070 Hb_002249_070 Hb_005181_160--Hb_002249_070 Hb_006538_090 Hb_006538_090 Hb_004005_020--Hb_006538_090 Hb_000723_230 Hb_000723_230 Hb_004005_020--Hb_000723_230 Hb_006637_030 Hb_006637_030 Hb_004005_020--Hb_006637_030 Hb_168893_020 Hb_168893_020 Hb_004005_020--Hb_168893_020 Hb_001016_100 Hb_001016_100 Hb_004005_020--Hb_001016_100 Hb_000853_150 Hb_000853_150 Hb_004005_020--Hb_000853_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.36424 7.83787 10.6762 6.06089 0.311184 1.21048
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.24156 12.5622 10.1764 7.76138 2.34637

CAGE analysis