Hb_000152_100

Information

Type -
Description -
Location Contig152: 55408-63327
Sequence    

Annotation

kegg
ID rcu:RCOM_1498520
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012090362.1
description PREDICTED: probable protein phosphatase 2C 75 isoform X2 [Jatropha curcas]
swissprot
ID Q9FLI3
description Probable protein phosphatase 2C 75 OS=Arabidopsis thaliana GN=AHG1 PE=2 SV=1
trembl
ID A0A067JHU3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26194 PE=3 SV=1
Gene Ontology
ID GO:0004721
description probable protein phosphatase 2c 75

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12946: 55899-63229 , PASA_asmbl_12947: 59474-59617
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_100 0.0 - - PREDICTED: probable protein phosphatase 2C 75 isoform X2 [Jatropha curcas]
2 Hb_007218_100 0.1596894375 - - phosphofructokinase [Hevea brasiliensis]
3 Hb_005015_030 0.1625645748 - - PREDICTED: uncharacterized protein LOC105636546 [Jatropha curcas]
4 Hb_098533_020 0.1664423832 - - PREDICTED: zinc finger AN1 domain-containing stress-associated protein 12 [Jatropha curcas]
5 Hb_000031_080 0.1674595486 - - PREDICTED: uncharacterized protein LOC105637482 [Jatropha curcas]
6 Hb_009778_040 0.1686315353 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
7 Hb_004567_020 0.1764384193 - - Small ubiquitin-related modifier 2 [Morus notabilis]
8 Hb_000191_030 0.1833072034 - - hypothetical protein POPTR_0012s07830g [Populus trichocarpa]
9 Hb_000809_060 0.1836072302 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
10 Hb_001105_090 0.1858490136 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
11 Hb_007885_010 0.1893728439 - - 60S ribosomal protein L24-1 isoform 1 [Theobroma cacao]
12 Hb_002248_100 0.1906250742 - - hypothetical protein VITISV_027197 [Vitis vinifera]
13 Hb_007313_080 0.1923524746 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]
14 Hb_015807_100 0.193080237 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
15 Hb_006588_080 0.1939751624 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
16 Hb_061195_020 0.1955284445 - - PREDICTED: uncharacterized protein LOC101990594 [Microtus ochrogaster]
17 Hb_002006_130 0.1959610964 - - PREDICTED: uncharacterized protein LOC105648712 [Jatropha curcas]
18 Hb_007245_080 0.1960377887 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
19 Hb_008066_030 0.196530251 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
20 Hb_001512_050 0.1966183734 - - copine, putative [Ricinus communis]

Gene co-expression network

sample Hb_000152_100 Hb_000152_100 Hb_007218_100 Hb_007218_100 Hb_000152_100--Hb_007218_100 Hb_005015_030 Hb_005015_030 Hb_000152_100--Hb_005015_030 Hb_098533_020 Hb_098533_020 Hb_000152_100--Hb_098533_020 Hb_000031_080 Hb_000031_080 Hb_000152_100--Hb_000031_080 Hb_009778_040 Hb_009778_040 Hb_000152_100--Hb_009778_040 Hb_004567_020 Hb_004567_020 Hb_000152_100--Hb_004567_020 Hb_100180_010 Hb_100180_010 Hb_007218_100--Hb_100180_010 Hb_010827_020 Hb_010827_020 Hb_007218_100--Hb_010827_020 Hb_002260_160 Hb_002260_160 Hb_007218_100--Hb_002260_160 Hb_021888_120 Hb_021888_120 Hb_007218_100--Hb_021888_120 Hb_001579_140 Hb_001579_140 Hb_007218_100--Hb_001579_140 Hb_002811_080 Hb_002811_080 Hb_005015_030--Hb_002811_080 Hb_006478_160 Hb_006478_160 Hb_005015_030--Hb_006478_160 Hb_000975_320 Hb_000975_320 Hb_005015_030--Hb_000975_320 Hb_000731_190 Hb_000731_190 Hb_005015_030--Hb_000731_190 Hb_002260_010 Hb_002260_010 Hb_005015_030--Hb_002260_010 Hb_001172_120 Hb_001172_120 Hb_005015_030--Hb_001172_120 Hb_098533_020--Hb_000031_080 Hb_000189_540 Hb_000189_540 Hb_098533_020--Hb_000189_540 Hb_000465_510 Hb_000465_510 Hb_098533_020--Hb_000465_510 Hb_000340_500 Hb_000340_500 Hb_098533_020--Hb_000340_500 Hb_098533_020--Hb_005015_030 Hb_000031_080--Hb_009778_040 Hb_002243_060 Hb_002243_060 Hb_000031_080--Hb_002243_060 Hb_000809_060 Hb_000809_060 Hb_000031_080--Hb_000809_060 Hb_002081_030 Hb_002081_030 Hb_000031_080--Hb_002081_030 Hb_000031_080--Hb_000465_510 Hb_009778_040--Hb_002081_030 Hb_002838_030 Hb_002838_030 Hb_009778_040--Hb_002838_030 Hb_001105_090 Hb_001105_090 Hb_009778_040--Hb_001105_090 Hb_003020_330 Hb_003020_330 Hb_009778_040--Hb_003020_330 Hb_006588_080 Hb_006588_080 Hb_009778_040--Hb_006588_080 Hb_120823_010 Hb_120823_010 Hb_009778_040--Hb_120823_010 Hb_004567_020--Hb_120823_010 Hb_004545_130 Hb_004545_130 Hb_004567_020--Hb_004545_130 Hb_000878_020 Hb_000878_020 Hb_004567_020--Hb_000878_020 Hb_000110_170 Hb_000110_170 Hb_004567_020--Hb_000110_170 Hb_147752_010 Hb_147752_010 Hb_004567_020--Hb_147752_010 Hb_007254_080 Hb_007254_080 Hb_004567_020--Hb_007254_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.37663 3.86465 4.3845 2.40756 0.780664 1.05148
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9483 17.7065 4.69653 3.96895 0.186933

CAGE analysis