Hb_007218_100

Information

Type -
Description -
Location Contig7218: 108489-112177
Sequence    

Annotation

kegg
ID rcu:RCOM_1487750
description phosphofructokinase, putative (EC:2.7.1.90)
nr
ID AIE47274.1
description phosphofructokinase [Hevea brasiliensis]
swissprot
ID Q94AA4
description ATP-dependent 6-phosphofructokinase 3 OS=Arabidopsis thaliana GN=PFK3 PE=1 SV=1
trembl
ID A0A068LJB7
description ATP-dependent 6-phosphofructokinase OS=Hevea brasiliensis GN=PFK5 PE=2 SV=1
Gene Ontology
ID GO:0003872
description atp-dependent 6-phosphofructokinase 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55678: 109548-110937
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007218_100 0.0 - - phosphofructokinase [Hevea brasiliensis]
2 Hb_100180_010 0.1592573992 - - PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
3 Hb_000152_100 0.1596894375 - - PREDICTED: probable protein phosphatase 2C 75 isoform X2 [Jatropha curcas]
4 Hb_010827_020 0.1653102764 - - 60S ribosomal protein L17B [Hevea brasiliensis]
5 Hb_002260_160 0.1697395535 - - conserved hypothetical protein [Ricinus communis]
6 Hb_021888_120 0.1741047691 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
7 Hb_001579_140 0.1888078061 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X2 [Jatropha curcas]
8 Hb_002112_010 0.1939260145 - - hypothetical protein POPTR_0001s45830g [Populus trichocarpa]
9 Hb_004567_020 0.198593702 - - Small ubiquitin-related modifier 2 [Morus notabilis]
10 Hb_002248_100 0.2005078207 - - hypothetical protein VITISV_027197 [Vitis vinifera]
11 Hb_003095_040 0.2043876641 - - hypothetical protein CICLE_v10030016mg [Citrus clementina]
12 Hb_000635_080 0.2047841922 - - 60S ribosomal protein L17A [Hevea brasiliensis]
13 Hb_003376_290 0.2052740982 - - hypothetical protein POPTR_0010s22880g [Populus trichocarpa]
14 Hb_001832_120 0.2056021187 - - hypothetical protein PHAVU_003G136800g [Phaseolus vulgaris]
15 Hb_000096_130 0.2056480082 - - hypothetical protein 23 [Hevea brasiliensis]
16 Hb_004545_130 0.2098666965 - - uncharacterized protein LOC100305465 [Glycine max]
17 Hb_002928_210 0.2107197632 - - -
18 Hb_002151_050 0.2126643795 - - cytochrome P450, putative [Ricinus communis]
19 Hb_004429_110 0.2149981187 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
20 Hb_005000_180 0.2154645467 - - hypothetical protein JCGZ_07408 [Jatropha curcas]

Gene co-expression network

sample Hb_007218_100 Hb_007218_100 Hb_100180_010 Hb_100180_010 Hb_007218_100--Hb_100180_010 Hb_000152_100 Hb_000152_100 Hb_007218_100--Hb_000152_100 Hb_010827_020 Hb_010827_020 Hb_007218_100--Hb_010827_020 Hb_002260_160 Hb_002260_160 Hb_007218_100--Hb_002260_160 Hb_021888_120 Hb_021888_120 Hb_007218_100--Hb_021888_120 Hb_001579_140 Hb_001579_140 Hb_007218_100--Hb_001579_140 Hb_004429_110 Hb_004429_110 Hb_100180_010--Hb_004429_110 Hb_004567_020 Hb_004567_020 Hb_100180_010--Hb_004567_020 Hb_001307_210 Hb_001307_210 Hb_100180_010--Hb_001307_210 Hb_000302_290 Hb_000302_290 Hb_100180_010--Hb_000302_290 Hb_100180_010--Hb_002260_160 Hb_005015_030 Hb_005015_030 Hb_000152_100--Hb_005015_030 Hb_098533_020 Hb_098533_020 Hb_000152_100--Hb_098533_020 Hb_000031_080 Hb_000031_080 Hb_000152_100--Hb_000031_080 Hb_009778_040 Hb_009778_040 Hb_000152_100--Hb_009778_040 Hb_000152_100--Hb_004567_020 Hb_001832_120 Hb_001832_120 Hb_010827_020--Hb_001832_120 Hb_002248_100 Hb_002248_100 Hb_010827_020--Hb_002248_100 Hb_000635_080 Hb_000635_080 Hb_010827_020--Hb_000635_080 Hb_000780_210 Hb_000780_210 Hb_010827_020--Hb_000780_210 Hb_001700_020 Hb_001700_020 Hb_010827_020--Hb_001700_020 Hb_183086_040 Hb_183086_040 Hb_010827_020--Hb_183086_040 Hb_002260_160--Hb_004429_110 Hb_004907_020 Hb_004907_020 Hb_002260_160--Hb_004907_020 Hb_002260_160--Hb_021888_120 Hb_001140_240 Hb_001140_240 Hb_002260_160--Hb_001140_240 Hb_000096_130 Hb_000096_130 Hb_021888_120--Hb_000096_130 Hb_007951_130 Hb_007951_130 Hb_021888_120--Hb_007951_130 Hb_007317_080 Hb_007317_080 Hb_021888_120--Hb_007317_080 Hb_000692_020 Hb_000692_020 Hb_021888_120--Hb_000692_020 Hb_000792_120 Hb_000792_120 Hb_001579_140--Hb_000792_120 Hb_000613_160 Hb_000613_160 Hb_001579_140--Hb_000613_160 Hb_012239_100 Hb_012239_100 Hb_001579_140--Hb_012239_100 Hb_005000_160 Hb_005000_160 Hb_001579_140--Hb_005000_160 Hb_009838_040 Hb_009838_040 Hb_001579_140--Hb_009838_040 Hb_000749_240 Hb_000749_240 Hb_001579_140--Hb_000749_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.98795 3.56179 1.96315 1.15303 0.586609 1.19357
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8538 23.6666 6.75629 9.12859 0.101318

CAGE analysis