Hb_000465_510

Information

Type -
Description -
Location Contig465: 457119-459668
Sequence    

Annotation

kegg
ID rcu:RCOM_0192270
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_011031957.1
description PREDICTED: GTP-binding protein YPTM2 [Populus euphratica]
swissprot
ID Q05737
description GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1
trembl
ID B9T0L1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0192270 PE=3 SV=1
Gene Ontology
ID GO:0005622
description gtp-binding protein yptm2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44021: 457159-459645
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_510 0.0 - - PREDICTED: GTP-binding protein YPTM2 [Populus euphratica]
2 Hb_003929_150 0.1100573679 - - PREDICTED: rRNA-processing protein fcf2-like [Jatropha curcas]
3 Hb_001322_070 0.1191940643 - - protein with unknown function [Ricinus communis]
4 Hb_000768_130 0.1290989926 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
5 Hb_002060_010 0.1292879872 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
6 Hb_000327_380 0.1330977953 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
7 Hb_010560_030 0.1364184073 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]
8 Hb_000009_290 0.141783556 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
9 Hb_000139_470 0.1427563494 - - Dual specificity protein phosphatase, putative [Ricinus communis]
10 Hb_006256_030 0.1443094114 - - PREDICTED: putative cyclic nucleotide-gated ion channel 18 [Jatropha curcas]
11 Hb_098315_020 0.1443199327 - - hypothetical protein M569_15712 [Genlisea aurea]
12 Hb_000155_160 0.1452203525 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
13 Hb_000739_140 0.1490746091 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
14 Hb_000922_040 0.1505821856 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
15 Hb_002239_050 0.1522870789 - - PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
16 Hb_003462_160 0.1523036068 transcription factor TF Family: GNAT predicted protein [Arabidopsis lyrata subsp. lyrata]
17 Hb_000215_330 0.153701511 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
18 Hb_000030_200 0.1542872223 - - PREDICTED: early nodulin-93-like [Populus euphratica]
19 Hb_000577_090 0.1547821175 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
20 Hb_008226_080 0.1550528197 - - Protein LRP16, putative [Ricinus communis]

Gene co-expression network

sample Hb_000465_510 Hb_000465_510 Hb_003929_150 Hb_003929_150 Hb_000465_510--Hb_003929_150 Hb_001322_070 Hb_001322_070 Hb_000465_510--Hb_001322_070 Hb_000768_130 Hb_000768_130 Hb_000465_510--Hb_000768_130 Hb_002060_010 Hb_002060_010 Hb_000465_510--Hb_002060_010 Hb_000327_380 Hb_000327_380 Hb_000465_510--Hb_000327_380 Hb_010560_030 Hb_010560_030 Hb_000465_510--Hb_010560_030 Hb_002235_080 Hb_002235_080 Hb_003929_150--Hb_002235_080 Hb_011236_010 Hb_011236_010 Hb_003929_150--Hb_011236_010 Hb_006478_160 Hb_006478_160 Hb_003929_150--Hb_006478_160 Hb_000155_160 Hb_000155_160 Hb_003929_150--Hb_000155_160 Hb_007245_080 Hb_007245_080 Hb_003929_150--Hb_007245_080 Hb_001718_030 Hb_001718_030 Hb_003929_150--Hb_001718_030 Hb_098315_020 Hb_098315_020 Hb_001322_070--Hb_098315_020 Hb_005460_060 Hb_005460_060 Hb_001322_070--Hb_005460_060 Hb_000009_290 Hb_000009_290 Hb_001322_070--Hb_000009_290 Hb_000215_330 Hb_000215_330 Hb_001322_070--Hb_000215_330 Hb_005306_070 Hb_005306_070 Hb_001322_070--Hb_005306_070 Hb_007313_080 Hb_007313_080 Hb_000768_130--Hb_007313_080 Hb_154141_030 Hb_154141_030 Hb_000768_130--Hb_154141_030 Hb_000739_140 Hb_000739_140 Hb_000768_130--Hb_000739_140 Hb_000768_130--Hb_000215_330 Hb_003020_330 Hb_003020_330 Hb_000768_130--Hb_003020_330 Hb_000768_130--Hb_005306_070 Hb_002060_010--Hb_001718_030 Hb_001188_030 Hb_001188_030 Hb_002060_010--Hb_001188_030 Hb_006256_030 Hb_006256_030 Hb_002060_010--Hb_006256_030 Hb_002060_010--Hb_098315_020 Hb_006355_040 Hb_006355_040 Hb_002060_010--Hb_006355_040 Hb_002060_010--Hb_000327_380 Hb_000327_380--Hb_000009_290 Hb_000805_240 Hb_000805_240 Hb_000327_380--Hb_000805_240 Hb_000327_380--Hb_010560_030 Hb_000327_230 Hb_000327_230 Hb_000327_380--Hb_000327_230 Hb_003362_030 Hb_003362_030 Hb_000327_380--Hb_003362_030 Hb_000045_300 Hb_000045_300 Hb_000327_380--Hb_000045_300 Hb_001053_140 Hb_001053_140 Hb_010560_030--Hb_001053_140 Hb_000189_240 Hb_000189_240 Hb_010560_030--Hb_000189_240 Hb_000302_140 Hb_000302_140 Hb_010560_030--Hb_000302_140 Hb_002303_060 Hb_002303_060 Hb_010560_030--Hb_002303_060 Hb_000087_130 Hb_000087_130 Hb_010560_030--Hb_000087_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0523 59.3721 54.7967 99.1467 10.7052 19.9682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
100.291 192.771 53.702 35.1334 37.7789

CAGE analysis