Hb_006907_080

Information

Type -
Description -
Location Contig6907: 47968-48689
Sequence    

Annotation

kegg
ID rcu:RCOM_0902970
description hypothetical protein
nr
ID XP_012092359.1
description PREDICTED: RPM1-interacting protein 4-like [Jatropha curcas]
swissprot
ID Q8GYN5
description RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1
trembl
ID B9RXE0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0902970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54323: 47991-48760
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006907_080 0.0 - - PREDICTED: RPM1-interacting protein 4-like [Jatropha curcas]
2 Hb_140049_010 0.0851991089 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
3 Hb_000120_150 0.1975733222 - - hypothetical protein JCGZ_08453 [Jatropha curcas]
4 Hb_007558_020 0.2042281158 - - hypothetical protein JCGZ_17631 [Jatropha curcas]
5 Hb_000418_080 0.21022697 - - PREDICTED: uncharacterized protein LOC105124652 [Populus euphratica]
6 Hb_104764_010 0.2147474247 - - hypothetical protein JCGZ_16024 [Jatropha curcas]
7 Hb_002035_110 0.219144102 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
8 Hb_010506_010 0.2217252814 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
9 Hb_000270_740 0.2251876646 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
10 Hb_004787_040 0.2259892445 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001123_210 0.2304444166 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
12 Hb_002341_020 0.2308610421 - - PREDICTED: pyruvate decarboxylase 2 [Populus euphratica]
13 Hb_001771_080 0.2344331493 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Amborella trichopoda]
14 Hb_173030_010 0.2398545884 - - hypothetical protein RCOM_1321060 [Ricinus communis]
15 Hb_010050_050 0.2414372843 - - PREDICTED: piezo-type mechanosensitive ion channel homolog isoform X2 [Jatropha curcas]
16 Hb_000031_080 0.242260347 - - PREDICTED: uncharacterized protein LOC105637482 [Jatropha curcas]
17 Hb_001675_030 0.2454932484 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000072_340 0.2522115141 - - conserved hypothetical protein [Ricinus communis]
19 Hb_009974_020 0.2529822461 - - PREDICTED: uncharacterized protein LOC104427753 [Eucalyptus grandis]
20 Hb_000788_060 0.2531469099 - - PREDICTED: uncharacterized protein LOC105629705 [Jatropha curcas]

Gene co-expression network

sample Hb_006907_080 Hb_006907_080 Hb_140049_010 Hb_140049_010 Hb_006907_080--Hb_140049_010 Hb_000120_150 Hb_000120_150 Hb_006907_080--Hb_000120_150 Hb_007558_020 Hb_007558_020 Hb_006907_080--Hb_007558_020 Hb_000418_080 Hb_000418_080 Hb_006907_080--Hb_000418_080 Hb_104764_010 Hb_104764_010 Hb_006907_080--Hb_104764_010 Hb_002035_110 Hb_002035_110 Hb_006907_080--Hb_002035_110 Hb_010506_010 Hb_010506_010 Hb_140049_010--Hb_010506_010 Hb_140049_010--Hb_000418_080 Hb_140049_010--Hb_000120_150 Hb_140049_010--Hb_007558_020 Hb_004787_040 Hb_004787_040 Hb_140049_010--Hb_004787_040 Hb_000072_340 Hb_000072_340 Hb_000120_150--Hb_000072_340 Hb_000120_150--Hb_010506_010 Hb_000120_150--Hb_004787_040 Hb_091889_010 Hb_091889_010 Hb_000120_150--Hb_091889_010 Hb_001164_030 Hb_001164_030 Hb_000120_150--Hb_001164_030 Hb_000270_740 Hb_000270_740 Hb_000120_150--Hb_000270_740 Hb_000394_110 Hb_000394_110 Hb_007558_020--Hb_000394_110 Hb_001771_080 Hb_001771_080 Hb_007558_020--Hb_001771_080 Hb_000343_180 Hb_000343_180 Hb_007558_020--Hb_000343_180 Hb_002849_140 Hb_002849_140 Hb_007558_020--Hb_002849_140 Hb_000891_030 Hb_000891_030 Hb_000418_080--Hb_000891_030 Hb_029243_010 Hb_029243_010 Hb_000418_080--Hb_029243_010 Hb_001507_030 Hb_001507_030 Hb_000418_080--Hb_001507_030 Hb_003687_030 Hb_003687_030 Hb_000418_080--Hb_003687_030 Hb_104764_010--Hb_001771_080 Hb_173030_010 Hb_173030_010 Hb_104764_010--Hb_173030_010 Hb_002341_020 Hb_002341_020 Hb_104764_010--Hb_002341_020 Hb_104764_010--Hb_007558_020 Hb_000886_030 Hb_000886_030 Hb_104764_010--Hb_000886_030 Hb_002686_120 Hb_002686_120 Hb_002035_110--Hb_002686_120 Hb_001049_020 Hb_001049_020 Hb_002035_110--Hb_001049_020 Hb_004631_210 Hb_004631_210 Hb_002035_110--Hb_004631_210 Hb_000948_080 Hb_000948_080 Hb_002035_110--Hb_000948_080 Hb_002374_380 Hb_002374_380 Hb_002035_110--Hb_002374_380 Hb_002035_110--Hb_000343_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.041971 0.892157 0.29733 1.02168 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.876187 1.37728 0.805818 0.470007 0

CAGE analysis