Hb_000418_080

Information

Type -
Description -
Location Contig418: 95335-95799
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12670g
description POPTRDRAFT_564591; hypothetical protein
nr
ID XP_011023060.1
description PREDICTED: uncharacterized protein LOC105124652 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HJ93
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s12670g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000418_080 0.0 - - PREDICTED: uncharacterized protein LOC105124652 [Populus euphratica]
2 Hb_000891_030 0.1981244532 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
3 Hb_140049_010 0.1993818557 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
4 Hb_006907_080 0.21022697 - - PREDICTED: RPM1-interacting protein 4-like [Jatropha curcas]
5 Hb_029243_010 0.2173226238 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
6 Hb_001507_030 0.2416220861 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
7 Hb_003687_030 0.2484799231 - - protein phosphatase 2c, putative [Ricinus communis]
8 Hb_010506_010 0.2516155492 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
9 Hb_091889_020 0.2522149462 - - -
10 Hb_007951_130 0.2539641259 desease resistance Gene Name: UBN2_3 JHL25H03.6 [Jatropha curcas]
11 Hb_000120_150 0.2566932105 - - hypothetical protein JCGZ_08453 [Jatropha curcas]
12 Hb_091889_010 0.2568686247 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
13 Hb_002110_240 0.2570575866 - - clathrin assembly protein, putative [Ricinus communis]
14 Hb_007558_020 0.2582985214 - - hypothetical protein JCGZ_17631 [Jatropha curcas]
15 Hb_011909_140 0.2583548421 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
16 Hb_012008_010 0.2621755023 - - -
17 Hb_118094_010 0.2653682577 - - hypothetical protein POPTR_0011s06595g [Populus trichocarpa]
18 Hb_032264_090 0.2658223802 - - hypothetical protein JCGZ_02512 [Jatropha curcas]
19 Hb_009233_030 0.2661102483 - - protein binding protein, putative [Ricinus communis]
20 Hb_008173_030 0.2677316166 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000418_080 Hb_000418_080 Hb_000891_030 Hb_000891_030 Hb_000418_080--Hb_000891_030 Hb_140049_010 Hb_140049_010 Hb_000418_080--Hb_140049_010 Hb_006907_080 Hb_006907_080 Hb_000418_080--Hb_006907_080 Hb_029243_010 Hb_029243_010 Hb_000418_080--Hb_029243_010 Hb_001507_030 Hb_001507_030 Hb_000418_080--Hb_001507_030 Hb_003687_030 Hb_003687_030 Hb_000418_080--Hb_003687_030 Hb_002701_220 Hb_002701_220 Hb_000891_030--Hb_002701_220 Hb_011909_140 Hb_011909_140 Hb_000891_030--Hb_011909_140 Hb_000649_130 Hb_000649_130 Hb_000891_030--Hb_000649_130 Hb_000465_510 Hb_000465_510 Hb_000891_030--Hb_000465_510 Hb_006615_080 Hb_006615_080 Hb_000891_030--Hb_006615_080 Hb_000891_030--Hb_001507_030 Hb_140049_010--Hb_006907_080 Hb_010506_010 Hb_010506_010 Hb_140049_010--Hb_010506_010 Hb_000120_150 Hb_000120_150 Hb_140049_010--Hb_000120_150 Hb_007558_020 Hb_007558_020 Hb_140049_010--Hb_007558_020 Hb_004787_040 Hb_004787_040 Hb_140049_010--Hb_004787_040 Hb_006907_080--Hb_000120_150 Hb_006907_080--Hb_007558_020 Hb_104764_010 Hb_104764_010 Hb_006907_080--Hb_104764_010 Hb_002035_110 Hb_002035_110 Hb_006907_080--Hb_002035_110 Hb_012008_010 Hb_012008_010 Hb_029243_010--Hb_012008_010 Hb_009233_030 Hb_009233_030 Hb_029243_010--Hb_009233_030 Hb_029243_010--Hb_001507_030 Hb_001771_080 Hb_001771_080 Hb_029243_010--Hb_001771_080 Hb_002272_010 Hb_002272_010 Hb_029243_010--Hb_002272_010 Hb_001511_190 Hb_001511_190 Hb_001507_030--Hb_001511_190 Hb_005663_070 Hb_005663_070 Hb_001507_030--Hb_005663_070 Hb_001944_020 Hb_001944_020 Hb_001507_030--Hb_001944_020 Hb_003020_180 Hb_003020_180 Hb_001507_030--Hb_003020_180 Hb_002450_030 Hb_002450_030 Hb_001507_030--Hb_002450_030 Hb_002759_260 Hb_002759_260 Hb_001507_030--Hb_002759_260 Hb_001675_030 Hb_001675_030 Hb_003687_030--Hb_001675_030 Hb_000886_030 Hb_000886_030 Hb_003687_030--Hb_000886_030 Hb_001728_020 Hb_001728_020 Hb_003687_030--Hb_001728_020 Hb_172632_050 Hb_172632_050 Hb_003687_030--Hb_172632_050 Hb_028707_070 Hb_028707_070 Hb_003687_030--Hb_028707_070 Hb_000529_280 Hb_000529_280 Hb_003687_030--Hb_000529_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.129021 5.30138 0.459832 2.80807 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.42589 5.00211 1.19142 0.598636 0.218829

CAGE analysis