Hb_002035_110

Information

Type transcription factor
Description TF Family: TRAF
Location Contig2035: 130668-134121
Sequence    

Annotation

kegg
ID rcu:RCOM_1160850
description Regulatory protein NPR1, putative
nr
ID XP_002520549.1
description Regulatory protein NPR1, putative [Ricinus communis]
swissprot
ID Q5ICL9
description Regulatory protein NPR4 OS=Arabidopsis thaliana GN=NPR4 PE=1 SV=1
trembl
ID B9S3I0
description Regulatory protein NPR1, putative OS=Ricinus communis GN=RCOM_1160850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002035_110 0.0 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
2 Hb_002686_120 0.1661019533 - - short-chain type dehydrogenase, putative [Ricinus communis]
3 Hb_001049_020 0.1765249423 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004631_210 0.1767161369 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
5 Hb_000948_080 0.1860341929 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
6 Hb_002374_380 0.1897438323 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
7 Hb_000343_180 0.1974615937 - - NDWp3 [Podospora anserina]
8 Hb_021888_050 0.2032045021 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
9 Hb_000796_250 0.2057703171 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
10 Hb_002341_020 0.2100718024 - - PREDICTED: pyruvate decarboxylase 2 [Populus euphratica]
11 Hb_001675_030 0.2115202467 - - conserved hypothetical protein [Ricinus communis]
12 Hb_008173_030 0.2155039363 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
13 Hb_140049_010 0.2172673329 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
14 Hb_001189_110 0.218386339 - - NAC transcription factor 066 [Jatropha curcas]
15 Hb_006907_080 0.219144102 - - PREDICTED: RPM1-interacting protein 4-like [Jatropha curcas]
16 Hb_000260_290 0.2208501266 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
17 Hb_003442_100 0.2251937355 - - PREDICTED: uncharacterized protein LOC105650128 [Jatropha curcas]
18 Hb_007558_020 0.225967051 - - hypothetical protein JCGZ_17631 [Jatropha curcas]
19 Hb_002636_080 0.2261899667 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
20 Hb_010050_050 0.2283704982 - - PREDICTED: piezo-type mechanosensitive ion channel homolog isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002035_110 Hb_002035_110 Hb_002686_120 Hb_002686_120 Hb_002035_110--Hb_002686_120 Hb_001049_020 Hb_001049_020 Hb_002035_110--Hb_001049_020 Hb_004631_210 Hb_004631_210 Hb_002035_110--Hb_004631_210 Hb_000948_080 Hb_000948_080 Hb_002035_110--Hb_000948_080 Hb_002374_380 Hb_002374_380 Hb_002035_110--Hb_002374_380 Hb_000343_180 Hb_000343_180 Hb_002035_110--Hb_000343_180 Hb_000111_480 Hb_000111_480 Hb_002686_120--Hb_000111_480 Hb_006573_300 Hb_006573_300 Hb_002686_120--Hb_006573_300 Hb_002686_120--Hb_004631_210 Hb_006453_010 Hb_006453_010 Hb_002686_120--Hb_006453_010 Hb_002686_120--Hb_000343_180 Hb_001049_020--Hb_004631_210 Hb_001341_100 Hb_001341_100 Hb_001049_020--Hb_001341_100 Hb_003442_070 Hb_003442_070 Hb_001049_020--Hb_003442_070 Hb_165669_010 Hb_165669_010 Hb_001049_020--Hb_165669_010 Hb_002577_010 Hb_002577_010 Hb_001049_020--Hb_002577_010 Hb_031862_040 Hb_031862_040 Hb_001049_020--Hb_031862_040 Hb_004631_210--Hb_001341_100 Hb_003327_070 Hb_003327_070 Hb_004631_210--Hb_003327_070 Hb_006538_080 Hb_006538_080 Hb_004631_210--Hb_006538_080 Hb_000997_180 Hb_000997_180 Hb_004631_210--Hb_000997_180 Hb_000699_230 Hb_000699_230 Hb_004631_210--Hb_000699_230 Hb_000071_070 Hb_000071_070 Hb_004631_210--Hb_000071_070 Hb_021888_050 Hb_021888_050 Hb_000948_080--Hb_021888_050 Hb_000975_360 Hb_000975_360 Hb_000948_080--Hb_000975_360 Hb_000402_210 Hb_000402_210 Hb_000948_080--Hb_000402_210 Hb_110560_010 Hb_110560_010 Hb_000948_080--Hb_110560_010 Hb_000948_080--Hb_002374_380 Hb_028487_020 Hb_028487_020 Hb_000948_080--Hb_028487_020 Hb_000694_060 Hb_000694_060 Hb_002374_380--Hb_000694_060 Hb_001433_110 Hb_001433_110 Hb_002374_380--Hb_001433_110 Hb_004453_080 Hb_004453_080 Hb_002374_380--Hb_004453_080 Hb_105602_010 Hb_105602_010 Hb_002374_380--Hb_105602_010 Hb_002374_380--Hb_003442_070 Hb_007850_080 Hb_007850_080 Hb_002374_380--Hb_007850_080 Hb_000802_110 Hb_000802_110 Hb_000343_180--Hb_000802_110 Hb_002110_240 Hb_002110_240 Hb_000343_180--Hb_002110_240 Hb_008173_030 Hb_008173_030 Hb_000343_180--Hb_008173_030 Hb_000732_250 Hb_000732_250 Hb_000343_180--Hb_000732_250 Hb_000343_180--Hb_000975_360 Hb_007558_020 Hb_007558_020 Hb_000343_180--Hb_007558_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.213404 1.66292 0.601393 1.01444 0.128193 0.072234
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.3464 1.4359 0.93004 1.84069 0

CAGE analysis