Hb_002686_120

Information

Type -
Description -
Location Contig2686: 57240-58055
Sequence    

Annotation

kegg
ID rcu:RCOM_1121790
description short-chain type dehydrogenase, putative (EC:1.1.1.100)
nr
ID XP_002525441.1
description short-chain type dehydrogenase, putative [Ricinus communis]
swissprot
ID Q08632
description Short-chain type dehydrogenase/reductase OS=Picea abies PE=2 SV=1
trembl
ID B9SHH2
description Short-chain type dehydrogenase, putative OS=Ricinus communis GN=RCOM_1121790 PE=4 SV=1
Gene Ontology
ID GO:0004316
description short-chain type dehydrogenase reductase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28000: 57574-57815
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_120 0.0 - - short-chain type dehydrogenase, putative [Ricinus communis]
2 Hb_002035_110 0.1661019533 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
3 Hb_000111_480 0.1813836529 - - PREDICTED: probable carboxylesterase 17 [Jatropha curcas]
4 Hb_006573_300 0.1828257079 - - ATP binding protein, putative [Ricinus communis]
5 Hb_004631_210 0.1923991831 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
6 Hb_006453_010 0.205414826 - - PREDICTED: glutaredoxin-C9 [Jatropha curcas]
7 Hb_000343_180 0.2082667778 - - NDWp3 [Podospora anserina]
8 Hb_001114_070 0.2088184923 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g58400 [Jatropha curcas]
9 Hb_003120_040 0.2116856498 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Jatropha curcas]
10 Hb_008173_030 0.2158722924 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
11 Hb_002374_380 0.2170778616 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
12 Hb_000868_100 0.21781896 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A [Jatropha curcas]
13 Hb_000802_110 0.2228821961 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
14 Hb_031862_040 0.2252227253 - - purine transporter, putative [Ricinus communis]
15 Hb_007676_020 0.2259569097 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 isoform X1 [Jatropha curcas]
16 Hb_000672_150 0.2275750818 - - Patatin T5 precursor, putative [Ricinus communis]
17 Hb_028707_070 0.2318149116 - - short-chain dehydrogenase, putative [Ricinus communis]
18 Hb_027467_010 0.2325125033 - - hypothetical protein PRUPE_ppa004106mg [Prunus persica]
19 Hb_001049_020 0.2325280822 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001113_030 0.2327535068 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]

Gene co-expression network

sample Hb_002686_120 Hb_002686_120 Hb_002035_110 Hb_002035_110 Hb_002686_120--Hb_002035_110 Hb_000111_480 Hb_000111_480 Hb_002686_120--Hb_000111_480 Hb_006573_300 Hb_006573_300 Hb_002686_120--Hb_006573_300 Hb_004631_210 Hb_004631_210 Hb_002686_120--Hb_004631_210 Hb_006453_010 Hb_006453_010 Hb_002686_120--Hb_006453_010 Hb_000343_180 Hb_000343_180 Hb_002686_120--Hb_000343_180 Hb_001049_020 Hb_001049_020 Hb_002035_110--Hb_001049_020 Hb_002035_110--Hb_004631_210 Hb_000948_080 Hb_000948_080 Hb_002035_110--Hb_000948_080 Hb_002374_380 Hb_002374_380 Hb_002035_110--Hb_002374_380 Hb_002035_110--Hb_000343_180 Hb_001113_030 Hb_001113_030 Hb_000111_480--Hb_001113_030 Hb_000042_250 Hb_000042_250 Hb_000111_480--Hb_000042_250 Hb_001936_070 Hb_001936_070 Hb_000111_480--Hb_001936_070 Hb_007676_020 Hb_007676_020 Hb_000111_480--Hb_007676_020 Hb_011716_050 Hb_011716_050 Hb_000111_480--Hb_011716_050 Hb_001114_070 Hb_001114_070 Hb_006573_300--Hb_001114_070 Hb_000853_060 Hb_000853_060 Hb_006573_300--Hb_000853_060 Hb_006573_300--Hb_006453_010 Hb_006573_300--Hb_007676_020 Hb_004195_090 Hb_004195_090 Hb_006573_300--Hb_004195_090 Hb_020805_170 Hb_020805_170 Hb_006573_300--Hb_020805_170 Hb_001341_100 Hb_001341_100 Hb_004631_210--Hb_001341_100 Hb_003327_070 Hb_003327_070 Hb_004631_210--Hb_003327_070 Hb_006538_080 Hb_006538_080 Hb_004631_210--Hb_006538_080 Hb_000997_180 Hb_000997_180 Hb_004631_210--Hb_000997_180 Hb_000699_230 Hb_000699_230 Hb_004631_210--Hb_000699_230 Hb_000071_070 Hb_000071_070 Hb_004631_210--Hb_000071_070 Hb_006453_010--Hb_000853_060 Hb_116349_040 Hb_116349_040 Hb_006453_010--Hb_116349_040 Hb_006453_010--Hb_001114_070 Hb_000165_210 Hb_000165_210 Hb_006453_010--Hb_000165_210 Hb_000983_080 Hb_000983_080 Hb_006453_010--Hb_000983_080 Hb_000802_110 Hb_000802_110 Hb_000343_180--Hb_000802_110 Hb_002110_240 Hb_002110_240 Hb_000343_180--Hb_002110_240 Hb_008173_030 Hb_008173_030 Hb_000343_180--Hb_008173_030 Hb_000732_250 Hb_000732_250 Hb_000343_180--Hb_000732_250 Hb_000975_360 Hb_000975_360 Hb_000343_180--Hb_000975_360 Hb_007558_020 Hb_007558_020 Hb_000343_180--Hb_007558_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0285859 2.52937 0.793651 0.873505 0.112926 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.31483 1.34404 1.12412 2.48824 0.207943

CAGE analysis