Hb_001113_030

Information

Type -
Description -
Location Contig1113: 109202-110143
Sequence    

Annotation

kegg
ID pop:POPTR_0003s21430g
description POPTRDRAFT_555238; hypothetical protein
nr
ID XP_012093327.1
description PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
swissprot
ID Q3T130
description Transmembrane protein 45B OS=Bos taurus GN=TMEM45B PE=2 SV=1
trembl
ID A0A067LAU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03459: 109218-109394 , PASA_asmbl_03460: 109546-109927
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001113_030 0.0 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
2 Hb_124315_030 0.1298226838 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
3 Hb_000111_480 0.1596470334 - - PREDICTED: probable carboxylesterase 17 [Jatropha curcas]
4 Hb_000672_150 0.1666168866 - - Patatin T5 precursor, putative [Ricinus communis]
5 Hb_008173_030 0.1839435015 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
6 Hb_001959_120 0.1888366977 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
7 Hb_089032_010 0.1915674397 - - PREDICTED: flotillin-like protein 3 [Jatropha curcas]
8 Hb_005048_050 0.192117119 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
9 Hb_000671_170 0.1943579764 - - kinase, putative [Ricinus communis]
10 Hb_000042_250 0.1987245643 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
11 Hb_000868_100 0.2090624686 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A [Jatropha curcas]
12 Hb_011716_050 0.2145448217 - - serine acetyltransferase [Hevea brasiliensis]
13 Hb_001472_130 0.2202231406 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
14 Hb_003120_040 0.2277247955 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Jatropha curcas]
15 Hb_007676_020 0.2279520091 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 isoform X1 [Jatropha curcas]
16 Hb_002686_120 0.2327535068 - - short-chain type dehydrogenase, putative [Ricinus communis]
17 Hb_000111_300 0.233744874 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
18 Hb_000671_160 0.2350746337 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
19 Hb_000608_020 0.2360393491 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
20 Hb_001936_070 0.2431923685 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001113_030 Hb_001113_030 Hb_124315_030 Hb_124315_030 Hb_001113_030--Hb_124315_030 Hb_000111_480 Hb_000111_480 Hb_001113_030--Hb_000111_480 Hb_000672_150 Hb_000672_150 Hb_001113_030--Hb_000672_150 Hb_008173_030 Hb_008173_030 Hb_001113_030--Hb_008173_030 Hb_001959_120 Hb_001959_120 Hb_001113_030--Hb_001959_120 Hb_089032_010 Hb_089032_010 Hb_001113_030--Hb_089032_010 Hb_003120_040 Hb_003120_040 Hb_124315_030--Hb_003120_040 Hb_052764_080 Hb_052764_080 Hb_124315_030--Hb_052764_080 Hb_000608_020 Hb_000608_020 Hb_124315_030--Hb_000608_020 Hb_011716_050 Hb_011716_050 Hb_124315_030--Hb_011716_050 Hb_009545_020 Hb_009545_020 Hb_124315_030--Hb_009545_020 Hb_000042_250 Hb_000042_250 Hb_000111_480--Hb_000042_250 Hb_001936_070 Hb_001936_070 Hb_000111_480--Hb_001936_070 Hb_002686_120 Hb_002686_120 Hb_000111_480--Hb_002686_120 Hb_007676_020 Hb_007676_020 Hb_000111_480--Hb_007676_020 Hb_000111_480--Hb_011716_050 Hb_000672_150--Hb_001959_120 Hb_168707_040 Hb_168707_040 Hb_000672_150--Hb_168707_040 Hb_001472_130 Hb_001472_130 Hb_000672_150--Hb_001472_130 Hb_000671_170 Hb_000671_170 Hb_000672_150--Hb_000671_170 Hb_000672_150--Hb_008173_030 Hb_002110_240 Hb_002110_240 Hb_008173_030--Hb_002110_240 Hb_000649_240 Hb_000649_240 Hb_008173_030--Hb_000649_240 Hb_000868_100 Hb_000868_100 Hb_008173_030--Hb_000868_100 Hb_000343_180 Hb_000343_180 Hb_008173_030--Hb_000343_180 Hb_002205_010 Hb_002205_010 Hb_008173_030--Hb_002205_010 Hb_000638_210 Hb_000638_210 Hb_008173_030--Hb_000638_210 Hb_000120_160 Hb_000120_160 Hb_001959_120--Hb_000120_160 Hb_001486_200 Hb_001486_200 Hb_001959_120--Hb_001486_200 Hb_000084_220 Hb_000084_220 Hb_001959_120--Hb_000084_220 Hb_001959_120--Hb_011716_050 Hb_002876_250 Hb_002876_250 Hb_001959_120--Hb_002876_250 Hb_089032_010--Hb_001936_070 Hb_089032_010--Hb_000111_480 Hb_089032_010--Hb_000671_170 Hb_089032_010--Hb_011716_050 Hb_006846_020 Hb_006846_020 Hb_089032_010--Hb_006846_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0834681 7.23512 0.866545 1.98135 0 0.0268765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.491596 2.14787 1.33866 3.20075 0.262462

CAGE analysis