Hb_168707_040

Information

Type transcription factor
Description TF Family: ERF
Location Contig168707: 22799-24013
Sequence    

Annotation

kegg
ID rcu:RCOM_0131910
description DNA binding protein, putative
nr
ID XP_002532770.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9FGF8
description Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1
trembl
ID B9T3F1
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0131910 PE=4 SV=1
Gene Ontology
ID GO:0050794
description ethylene-responsive transcription factor abr1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168707_040 0.0 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
2 Hb_000802_110 0.1648637656 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
3 Hb_000672_150 0.1743817492 - - Patatin T5 precursor, putative [Ricinus communis]
4 Hb_128524_020 0.2173952192 - - PREDICTED: aspartic proteinase-like protein 2 isoform X2 [Jatropha curcas]
5 Hb_027467_010 0.2237049365 - - hypothetical protein PRUPE_ppa004106mg [Prunus persica]
6 Hb_000139_100 0.225389511 - - PREDICTED: sugar transport protein 13-like [Jatropha curcas]
7 Hb_002766_050 0.2339807411 - - PREDICTED: probable carboxylesterase 16 [Jatropha curcas]
8 Hb_003605_240 0.237402202 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
9 Hb_000343_180 0.2379058606 - - NDWp3 [Podospora anserina]
10 Hb_002849_140 0.2487827915 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
11 Hb_005147_010 0.2580178354 - - PREDICTED: uncharacterized protein LOC105629670 [Jatropha curcas]
12 Hb_000676_270 0.2616729069 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
13 Hb_168319_010 0.2668818201 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
14 Hb_000538_030 0.2682559458 - - glutathione s-transferase, putative [Ricinus communis]
15 Hb_000809_090 0.2703698211 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
16 Hb_001959_120 0.2708195557 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
17 Hb_000049_240 0.2709164545 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
18 Hb_002110_240 0.2731208639 - - clathrin assembly protein, putative [Ricinus communis]
19 Hb_010891_020 0.2736697494 - - Cucumisin precursor, putative [Ricinus communis]
20 Hb_007558_020 0.2759066659 - - hypothetical protein JCGZ_17631 [Jatropha curcas]

Gene co-expression network

sample Hb_168707_040 Hb_168707_040 Hb_000802_110 Hb_000802_110 Hb_168707_040--Hb_000802_110 Hb_000672_150 Hb_000672_150 Hb_168707_040--Hb_000672_150 Hb_128524_020 Hb_128524_020 Hb_168707_040--Hb_128524_020 Hb_027467_010 Hb_027467_010 Hb_168707_040--Hb_027467_010 Hb_000139_100 Hb_000139_100 Hb_168707_040--Hb_000139_100 Hb_002766_050 Hb_002766_050 Hb_168707_040--Hb_002766_050 Hb_000343_180 Hb_000343_180 Hb_000802_110--Hb_000343_180 Hb_000802_110--Hb_000672_150 Hb_014613_010 Hb_014613_010 Hb_000802_110--Hb_014613_010 Hb_002686_120 Hb_002686_120 Hb_000802_110--Hb_002686_120 Hb_001894_090 Hb_001894_090 Hb_000802_110--Hb_001894_090 Hb_001959_120 Hb_001959_120 Hb_000672_150--Hb_001959_120 Hb_001113_030 Hb_001113_030 Hb_000672_150--Hb_001113_030 Hb_001472_130 Hb_001472_130 Hb_000672_150--Hb_001472_130 Hb_000671_170 Hb_000671_170 Hb_000672_150--Hb_000671_170 Hb_008173_030 Hb_008173_030 Hb_000672_150--Hb_008173_030 Hb_002849_140 Hb_002849_140 Hb_128524_020--Hb_002849_140 Hb_004965_050 Hb_004965_050 Hb_128524_020--Hb_004965_050 Hb_002675_200 Hb_002675_200 Hb_128524_020--Hb_002675_200 Hb_031822_010 Hb_031822_010 Hb_128524_020--Hb_031822_010 Hb_003001_020 Hb_003001_020 Hb_128524_020--Hb_003001_020 Hb_001619_040 Hb_001619_040 Hb_027467_010--Hb_001619_040 Hb_024468_010 Hb_024468_010 Hb_027467_010--Hb_024468_010 Hb_028707_070 Hb_028707_070 Hb_027467_010--Hb_028707_070 Hb_027467_010--Hb_000672_150 Hb_000021_050 Hb_000021_050 Hb_027467_010--Hb_000021_050 Hb_000152_860 Hb_000152_860 Hb_000139_100--Hb_000152_860 Hb_005496_070 Hb_005496_070 Hb_000139_100--Hb_005496_070 Hb_000139_100--Hb_000672_150 Hb_001511_250 Hb_001511_250 Hb_000139_100--Hb_001511_250 Hb_000813_160 Hb_000813_160 Hb_000139_100--Hb_000813_160 Hb_000139_100--Hb_001472_130 Hb_004208_140 Hb_004208_140 Hb_002766_050--Hb_004208_140 Hb_010891_020 Hb_010891_020 Hb_002766_050--Hb_010891_020 Hb_001616_110 Hb_001616_110 Hb_002766_050--Hb_001616_110 Hb_001054_070 Hb_001054_070 Hb_002766_050--Hb_001054_070 Hb_027654_080 Hb_027654_080 Hb_002766_050--Hb_027654_080 Hb_000123_240 Hb_000123_240 Hb_002766_050--Hb_000123_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.44573 0.541047 0.124779 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.338703 0.685024 0.772384 0.275237 0.234175

CAGE analysis