Hb_003001_020

Information

Type -
Description -
Location Contig3001: 19531-21344
Sequence    

Annotation

kegg
ID rcu:RCOM_1417730
description hypothetical protein
nr
ID KDP26350.1
description hypothetical protein JCGZ_17508 [Jatropha curcas]
swissprot
ID Q94F39
description Ninja-family protein AFP3 OS=Arabidopsis thaliana GN=AFP3 PE=1 SV=1
trembl
ID A0A067K266
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17508 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31648: 19944-21522
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003001_020 0.0 - - hypothetical protein JCGZ_17508 [Jatropha curcas]
2 Hb_168319_010 0.2023596811 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
3 Hb_128524_020 0.2137109452 - - PREDICTED: aspartic proteinase-like protein 2 isoform X2 [Jatropha curcas]
4 Hb_025708_010 0.2143536971 - - hypothetical protein MTR_1g051060 [Medicago truncatula]
5 Hb_025708_020 0.2228514304 - - receptor protein kinase, putative [Ricinus communis]
6 Hb_012423_060 0.2247262759 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]
7 Hb_165026_010 0.2261907141 transcription factor TF Family: NAC hypothetical protein JCGZ_14166 [Jatropha curcas]
8 Hb_004965_050 0.2307343398 - - PREDICTED: uncharacterized protein LOC105645055 [Jatropha curcas]
9 Hb_006120_150 0.23232321 - - invertase [Hevea brasiliensis]
10 Hb_000123_240 0.2324125476 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
11 Hb_023344_080 0.2367200561 - - PREDICTED: uncharacterized protein LOC105644472 isoform X1 [Jatropha curcas]
12 Hb_000813_160 0.2416328639 - - hypothetical protein PRUPE_ppa013181mg [Prunus persica]
13 Hb_011618_100 0.2427945827 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA1, putative [Ricinus communis]
14 Hb_001486_010 0.2438889564 - - adenylsulfate kinase, putative [Ricinus communis]
15 Hb_000123_220 0.2444853806 transcription factor TF Family: C2H2 hypothetical protein JCGZ_18434 [Jatropha curcas]
16 Hb_000538_030 0.2499209102 - - glutathione s-transferase, putative [Ricinus communis]
17 Hb_001636_060 0.2523092351 - - Putative serine/threonine-protein kinase-like protein CCR3 [Glycine soja]
18 Hb_005539_260 0.2529442256 - - PREDICTED: potassium transporter 6 [Jatropha curcas]
19 Hb_002849_140 0.2550857403 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
20 Hb_003077_050 0.2618123536 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]

Gene co-expression network

sample Hb_003001_020 Hb_003001_020 Hb_168319_010 Hb_168319_010 Hb_003001_020--Hb_168319_010 Hb_128524_020 Hb_128524_020 Hb_003001_020--Hb_128524_020 Hb_025708_010 Hb_025708_010 Hb_003001_020--Hb_025708_010 Hb_025708_020 Hb_025708_020 Hb_003001_020--Hb_025708_020 Hb_012423_060 Hb_012423_060 Hb_003001_020--Hb_012423_060 Hb_165026_010 Hb_165026_010 Hb_003001_020--Hb_165026_010 Hb_012340_060 Hb_012340_060 Hb_168319_010--Hb_012340_060 Hb_002027_030 Hb_002027_030 Hb_168319_010--Hb_002027_030 Hb_168319_010--Hb_025708_010 Hb_168319_010--Hb_025708_020 Hb_001619_040 Hb_001619_040 Hb_168319_010--Hb_001619_040 Hb_000123_220 Hb_000123_220 Hb_168319_010--Hb_000123_220 Hb_002849_140 Hb_002849_140 Hb_128524_020--Hb_002849_140 Hb_004965_050 Hb_004965_050 Hb_128524_020--Hb_004965_050 Hb_002675_200 Hb_002675_200 Hb_128524_020--Hb_002675_200 Hb_031822_010 Hb_031822_010 Hb_128524_020--Hb_031822_010 Hb_168707_040 Hb_168707_040 Hb_128524_020--Hb_168707_040 Hb_025708_010--Hb_025708_020 Hb_025708_010--Hb_012340_060 Hb_000123_240 Hb_000123_240 Hb_025708_010--Hb_000123_240 Hb_025708_010--Hb_000123_220 Hb_007262_030 Hb_007262_030 Hb_025708_010--Hb_007262_030 Hb_000226_080 Hb_000226_080 Hb_025708_020--Hb_000226_080 Hb_025708_020--Hb_012340_060 Hb_023344_060 Hb_023344_060 Hb_025708_020--Hb_023344_060 Hb_000656_390 Hb_000656_390 Hb_025708_020--Hb_000656_390 Hb_008747_010 Hb_008747_010 Hb_012423_060--Hb_008747_010 Hb_002284_080 Hb_002284_080 Hb_012423_060--Hb_002284_080 Hb_001381_060 Hb_001381_060 Hb_012423_060--Hb_001381_060 Hb_011618_100 Hb_011618_100 Hb_012423_060--Hb_011618_100 Hb_002343_010 Hb_002343_010 Hb_012423_060--Hb_002343_010 Hb_012092_090 Hb_012092_090 Hb_012423_060--Hb_012092_090 Hb_001105_110 Hb_001105_110 Hb_165026_010--Hb_001105_110 Hb_010872_070 Hb_010872_070 Hb_165026_010--Hb_010872_070 Hb_000197_250 Hb_000197_250 Hb_165026_010--Hb_000197_250 Hb_165026_010--Hb_000656_390 Hb_007810_010 Hb_007810_010 Hb_165026_010--Hb_007810_010 Hb_002042_170 Hb_002042_170 Hb_165026_010--Hb_002042_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.121542 4.34938 2.95273 2.72174 0.0261543 0.117351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.477226 1.37662 4.8406 0.499652 0.889567

CAGE analysis