Hb_011618_100

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig11618: 139091-148637
Sequence    

Annotation

kegg
ID rcu:RCOM_0895150
description Auxin-responsive protein IAA1, putative
nr
ID XP_002517529.1
description Auxin-responsive protein IAA1, putative [Ricinus communis]
swissprot
ID P13088
description Auxin-induced protein AUX22 OS=Glycine max GN=AUX22 PE=2 SV=1
trembl
ID B9RUW0
description Auxin-responsive protein OS=Ricinus communis GN=RCOM_0895150 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-responsive protein iaa1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05002: 147314-148724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011618_100 0.0 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA1, putative [Ricinus communis]
2 Hb_000913_080 0.128718517 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 11 [Jatropha curcas]
3 Hb_000813_160 0.1352721339 - - hypothetical protein PRUPE_ppa013181mg [Prunus persica]
4 Hb_091889_020 0.166650869 - - -
5 Hb_027654_080 0.1732262425 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like isoform X1 [Jatropha curcas]
6 Hb_014720_050 0.1766433427 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
7 Hb_002284_080 0.1810326464 - - protein with unknown function [Ricinus communis]
8 Hb_000645_200 0.1813876078 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
9 Hb_012092_090 0.1814249736 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X2 [Jatropha curcas]
10 Hb_012423_060 0.1864327701 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]
11 Hb_001486_200 0.1869272148 - - PREDICTED: uncharacterized protein LOC105632606 [Jatropha curcas]
12 Hb_000123_220 0.1879278925 transcription factor TF Family: C2H2 hypothetical protein JCGZ_18434 [Jatropha curcas]
13 Hb_002343_010 0.1889780329 - - amino acid binding protein, putative [Ricinus communis]
14 Hb_001636_060 0.1984056321 - - Putative serine/threonine-protein kinase-like protein CCR3 [Glycine soja]
15 Hb_168319_010 0.1990614001 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
16 Hb_000320_020 0.2003834984 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
17 Hb_001433_160 0.2048026303 - - phosphatase 2C family protein [Populus trichocarpa]
18 Hb_001381_060 0.2055857115 - - monoxygenase, putative [Ricinus communis]
19 Hb_005701_110 0.205699195 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
20 Hb_005054_020 0.2094192335 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]

Gene co-expression network

sample Hb_011618_100 Hb_011618_100 Hb_000913_080 Hb_000913_080 Hb_011618_100--Hb_000913_080 Hb_000813_160 Hb_000813_160 Hb_011618_100--Hb_000813_160 Hb_091889_020 Hb_091889_020 Hb_011618_100--Hb_091889_020 Hb_027654_080 Hb_027654_080 Hb_011618_100--Hb_027654_080 Hb_014720_050 Hb_014720_050 Hb_011618_100--Hb_014720_050 Hb_002284_080 Hb_002284_080 Hb_011618_100--Hb_002284_080 Hb_001486_200 Hb_001486_200 Hb_000913_080--Hb_001486_200 Hb_001433_160 Hb_001433_160 Hb_000913_080--Hb_001433_160 Hb_001381_060 Hb_001381_060 Hb_000913_080--Hb_001381_060 Hb_000913_080--Hb_014720_050 Hb_000913_080--Hb_002284_080 Hb_000813_160--Hb_091889_020 Hb_000813_160--Hb_000913_080 Hb_009189_050 Hb_009189_050 Hb_000813_160--Hb_009189_050 Hb_000813_160--Hb_014720_050 Hb_000139_100 Hb_000139_100 Hb_000813_160--Hb_000139_100 Hb_003911_030 Hb_003911_030 Hb_091889_020--Hb_003911_030 Hb_091889_020--Hb_000913_080 Hb_000649_150 Hb_000649_150 Hb_091889_020--Hb_000649_150 Hb_168319_010 Hb_168319_010 Hb_091889_020--Hb_168319_010 Hb_010891_020 Hb_010891_020 Hb_027654_080--Hb_010891_020 Hb_012340_060 Hb_012340_060 Hb_027654_080--Hb_012340_060 Hb_000529_280 Hb_000529_280 Hb_027654_080--Hb_000529_280 Hb_001616_110 Hb_001616_110 Hb_027654_080--Hb_001616_110 Hb_001277_050 Hb_001277_050 Hb_027654_080--Hb_001277_050 Hb_000645_200 Hb_000645_200 Hb_027654_080--Hb_000645_200 Hb_000735_140 Hb_000735_140 Hb_014720_050--Hb_000735_140 Hb_007382_100 Hb_007382_100 Hb_014720_050--Hb_007382_100 Hb_001318_140 Hb_001318_140 Hb_014720_050--Hb_001318_140 Hb_001226_170 Hb_001226_170 Hb_014720_050--Hb_001226_170 Hb_000056_080 Hb_000056_080 Hb_014720_050--Hb_000056_080 Hb_014720_050--Hb_001486_200 Hb_002000_090 Hb_002000_090 Hb_002284_080--Hb_002000_090 Hb_002284_080--Hb_001433_160 Hb_005054_020 Hb_005054_020 Hb_002284_080--Hb_005054_020 Hb_003710_020 Hb_003710_020 Hb_002284_080--Hb_003710_020 Hb_183086_070 Hb_183086_070 Hb_002284_080--Hb_183086_070 Hb_001353_020 Hb_001353_020 Hb_002284_080--Hb_001353_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.65705 54.8993 43.2568 52.2915 0.0732291 0.377422
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.03138 31.955 22.6113 22.6371 18.0431

CAGE analysis