Hb_003911_030

Information

Type -
Description -
Location Contig3911: 61530-68803
Sequence    

Annotation

kegg
ID rcu:RCOM_1121650
description glutamate dehydrogenase, putative (EC:1.4.1.3)
nr
ID XP_002525427.1
description glutamate dehydrogenase, putative [Ricinus communis]
swissprot
ID Q43314
description Glutamate dehydrogenase 1 OS=Arabidopsis thaliana GN=GDH1 PE=2 SV=1
trembl
ID B9SHF8
description Glutamate dehydrogenase OS=Ricinus communis GN=RCOM_1121650 PE=3 SV=1
Gene Ontology
ID GO:0016639
description glutamate dehydrogenase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39182: 61432-68775
cDNA
(Sanger)
(ID:Location)		 002_H05.ab1: 65996-67775 , 050_E24.ab1: 65996-67515

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003911_030 0.0 - - glutamate dehydrogenase, putative [Ricinus communis]
2 Hb_000271_080 0.2070467307 - - hypothetical protein POPTR_0006s08460g [Populus trichocarpa]
3 Hb_091889_020 0.2102404813 - - -
4 Hb_002205_170 0.2111839701 - - PREDICTED: uncharacterized protein LOC105649179 [Jatropha curcas]
5 Hb_004648_110 0.224972739 - - ATP binding protein, putative [Ricinus communis]
6 Hb_000813_160 0.2330125921 - - hypothetical protein PRUPE_ppa013181mg [Prunus persica]
7 Hb_002603_110 0.2339180817 - - PREDICTED: uncharacterized protein LOC105646325 [Jatropha curcas]
8 Hb_000164_010 0.2591871962 - - small heat-shock protein, putative [Ricinus communis]
9 Hb_052764_070 0.2608381996 - - PREDICTED: uncharacterized protein LOC105649473 [Jatropha curcas]
10 Hb_000891_030 0.2623717535 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
11 Hb_001098_030 0.2626716764 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Populus euphratica]
12 Hb_001507_030 0.2666957642 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
13 Hb_003680_140 0.2677996122 - - PREDICTED: uncharacterized protein LOC105121770 [Populus euphratica]
14 Hb_000007_200 0.2708205399 - - PREDICTED: choline/ethanolaminephosphotransferase 1 [Jatropha curcas]
15 Hb_002078_290 0.2725929375 - - PREDICTED: uncharacterized protein LOC100852520 [Vitis vinifera]
16 Hb_000318_080 0.2736642274 - - PREDICTED: la-related protein 6C [Jatropha curcas]
17 Hb_118094_010 0.2739086764 - - hypothetical protein POPTR_0011s06595g [Populus trichocarpa]
18 Hb_003014_020 0.2739697114 - - electron transporter, putative [Ricinus communis]
19 Hb_000649_150 0.2755959961 - - PREDICTED: uncharacterized protein LOC105634115 [Jatropha curcas]
20 Hb_000258_060 0.2780987998 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003911_030 Hb_003911_030 Hb_000271_080 Hb_000271_080 Hb_003911_030--Hb_000271_080 Hb_091889_020 Hb_091889_020 Hb_003911_030--Hb_091889_020 Hb_002205_170 Hb_002205_170 Hb_003911_030--Hb_002205_170 Hb_004648_110 Hb_004648_110 Hb_003911_030--Hb_004648_110 Hb_000813_160 Hb_000813_160 Hb_003911_030--Hb_000813_160 Hb_002603_110 Hb_002603_110 Hb_003911_030--Hb_002603_110 Hb_000271_080--Hb_004648_110 Hb_023344_020 Hb_023344_020 Hb_000271_080--Hb_023344_020 Hb_001770_010 Hb_001770_010 Hb_000271_080--Hb_001770_010 Hb_000318_080 Hb_000318_080 Hb_000271_080--Hb_000318_080 Hb_092706_010 Hb_092706_010 Hb_000271_080--Hb_092706_010 Hb_091889_020--Hb_000813_160 Hb_011618_100 Hb_011618_100 Hb_091889_020--Hb_011618_100 Hb_000913_080 Hb_000913_080 Hb_091889_020--Hb_000913_080 Hb_000649_150 Hb_000649_150 Hb_091889_020--Hb_000649_150 Hb_168319_010 Hb_168319_010 Hb_091889_020--Hb_168319_010 Hb_001195_070 Hb_001195_070 Hb_002205_170--Hb_001195_070 Hb_015941_050 Hb_015941_050 Hb_002205_170--Hb_015941_050 Hb_000175_260 Hb_000175_260 Hb_002205_170--Hb_000175_260 Hb_001584_240 Hb_001584_240 Hb_002205_170--Hb_001584_240 Hb_000007_200 Hb_000007_200 Hb_002205_170--Hb_000007_200 Hb_000742_030 Hb_000742_030 Hb_002205_170--Hb_000742_030 Hb_001098_030 Hb_001098_030 Hb_004648_110--Hb_001098_030 Hb_012239_050 Hb_012239_050 Hb_004648_110--Hb_012239_050 Hb_004648_110--Hb_002603_110 Hb_007254_030 Hb_007254_030 Hb_004648_110--Hb_007254_030 Hb_000813_160--Hb_011618_100 Hb_000813_160--Hb_000913_080 Hb_009189_050 Hb_009189_050 Hb_000813_160--Hb_009189_050 Hb_014720_050 Hb_014720_050 Hb_000813_160--Hb_014720_050 Hb_000139_100 Hb_000139_100 Hb_000813_160--Hb_000139_100 Hb_001975_030 Hb_001975_030 Hb_002603_110--Hb_001975_030 Hb_000483_100 Hb_000483_100 Hb_002603_110--Hb_000483_100 Hb_000008_060 Hb_000008_060 Hb_002603_110--Hb_000008_060 Hb_000086_390 Hb_000086_390 Hb_002603_110--Hb_000086_390 Hb_003226_200 Hb_003226_200 Hb_002603_110--Hb_003226_200 Hb_032568_010 Hb_032568_010 Hb_002603_110--Hb_032568_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.2556 43.2131 12.9547 92.6867 0.371345 0.785323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.60889 69.8521 20.1879 4.53019 34.2288

CAGE analysis