Hb_000271_080

Information

Type -
Description -
Location Contig271: 189233-190142
Sequence    

Annotation

kegg
ID pop:POPTR_0006s08460g
description POPTRDRAFT_560753; hypothetical protein
nr
ID XP_002309051.1
description hypothetical protein POPTR_0006s08460g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HBK8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s08460g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000271_080 0.0 - - hypothetical protein POPTR_0006s08460g [Populus trichocarpa]
2 Hb_003911_030 0.2070467307 - - glutamate dehydrogenase, putative [Ricinus communis]
3 Hb_004648_110 0.237360404 - - ATP binding protein, putative [Ricinus communis]
4 Hb_023344_020 0.2686817842 - - -
5 Hb_001770_010 0.2850370308 - - hypothetical protein JCGZ_15779 [Jatropha curcas]
6 Hb_000318_080 0.2875378076 - - PREDICTED: la-related protein 6C [Jatropha curcas]
7 Hb_092706_010 0.2908607936 - - PREDICTED: beta-galactosidase-like [Jatropha curcas]
8 Hb_000879_150 0.2953377571 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002078_290 0.2960625643 - - PREDICTED: uncharacterized protein LOC100852520 [Vitis vinifera]
10 Hb_080192_010 0.2999307789 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
11 Hb_164114_010 0.3030149731 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
12 Hb_000099_140 0.3065243023 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
13 Hb_012239_050 0.3067127249 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006938_040 0.3087268159 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
15 Hb_002205_170 0.3096907331 - - PREDICTED: uncharacterized protein LOC105649179 [Jatropha curcas]
16 Hb_000679_030 0.3181120865 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5 [Jatropha curcas]
17 Hb_003125_110 0.3235486349 - - PREDICTED: protein indeterminate-domain 16 [Jatropha curcas]
18 Hb_001098_030 0.3251762301 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Populus euphratica]
19 Hb_122940_010 0.3261402444 - - PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Populus euphratica]
20 Hb_000028_430 0.326325473 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000271_080 Hb_000271_080 Hb_003911_030 Hb_003911_030 Hb_000271_080--Hb_003911_030 Hb_004648_110 Hb_004648_110 Hb_000271_080--Hb_004648_110 Hb_023344_020 Hb_023344_020 Hb_000271_080--Hb_023344_020 Hb_001770_010 Hb_001770_010 Hb_000271_080--Hb_001770_010 Hb_000318_080 Hb_000318_080 Hb_000271_080--Hb_000318_080 Hb_092706_010 Hb_092706_010 Hb_000271_080--Hb_092706_010 Hb_091889_020 Hb_091889_020 Hb_003911_030--Hb_091889_020 Hb_002205_170 Hb_002205_170 Hb_003911_030--Hb_002205_170 Hb_003911_030--Hb_004648_110 Hb_000813_160 Hb_000813_160 Hb_003911_030--Hb_000813_160 Hb_002603_110 Hb_002603_110 Hb_003911_030--Hb_002603_110 Hb_001098_030 Hb_001098_030 Hb_004648_110--Hb_001098_030 Hb_012239_050 Hb_012239_050 Hb_004648_110--Hb_012239_050 Hb_004648_110--Hb_002603_110 Hb_007254_030 Hb_007254_030 Hb_004648_110--Hb_007254_030 Hb_023344_020--Hb_001770_010 Hb_010457_040 Hb_010457_040 Hb_023344_020--Hb_010457_040 Hb_080192_010 Hb_080192_010 Hb_023344_020--Hb_080192_010 Hb_003589_100 Hb_003589_100 Hb_023344_020--Hb_003589_100 Hb_009492_020 Hb_009492_020 Hb_023344_020--Hb_009492_020 Hb_000930_020 Hb_000930_020 Hb_001770_010--Hb_000930_020 Hb_003090_170 Hb_003090_170 Hb_001770_010--Hb_003090_170 Hb_186312_010 Hb_186312_010 Hb_001770_010--Hb_186312_010 Hb_000805_220 Hb_000805_220 Hb_001770_010--Hb_000805_220 Hb_002060_070 Hb_002060_070 Hb_001770_010--Hb_002060_070 Hb_052764_070 Hb_052764_070 Hb_000318_080--Hb_052764_070 Hb_097218_020 Hb_097218_020 Hb_000318_080--Hb_097218_020 Hb_000007_200 Hb_000007_200 Hb_000318_080--Hb_000007_200 Hb_118094_010 Hb_118094_010 Hb_000318_080--Hb_118094_010 Hb_001767_060 Hb_001767_060 Hb_000318_080--Hb_001767_060 Hb_000886_030 Hb_000886_030 Hb_000318_080--Hb_000886_030 Hb_185298_010 Hb_185298_010 Hb_092706_010--Hb_185298_010 Hb_010883_120 Hb_010883_120 Hb_092706_010--Hb_010883_120 Hb_002631_280 Hb_002631_280 Hb_092706_010--Hb_002631_280 Hb_005144_010 Hb_005144_010 Hb_092706_010--Hb_005144_010 Hb_018279_020 Hb_018279_020 Hb_092706_010--Hb_018279_020 Hb_000365_250 Hb_000365_250 Hb_092706_010--Hb_000365_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.200397 5.64931 1.33278 11.5725 0.594711 0.187437
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 8.30876 0.245316 0.254258 5.16306

CAGE analysis