Hb_012239_050

Information

Type -
Description -
Location Contig12239: 55363-55593
Sequence    

Annotation

kegg
ID rcu:RCOM_0597970
description hypothetical protein
nr
ID XP_002525992.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SJ23
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0597970 PE=4 SV=1
Gene Ontology
ID GO:0005634
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06809: 55576-55685
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012239_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004648_110 0.1699409368 - - ATP binding protein, putative [Ricinus communis]
3 Hb_010691_010 0.1762796729 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
4 Hb_012132_020 0.1817748887 - - glutamine synthetase [Hevea brasiliensis]
5 Hb_001098_030 0.2132719481 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Populus euphratica]
6 Hb_000679_030 0.214315198 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5 [Jatropha curcas]
7 Hb_002603_110 0.2194672081 - - PREDICTED: uncharacterized protein LOC105646325 [Jatropha curcas]
8 Hb_000386_050 0.2280917113 - - PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Jatropha curcas]
9 Hb_164945_020 0.2296775447 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
10 Hb_012851_020 0.2324434975 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_000008_060 0.2348797575 - - protein binding protein, putative [Ricinus communis]
12 Hb_007425_020 0.2381984915 transcription factor TF Family: ERF PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like [Jatropha curcas]
13 Hb_012239_010 0.2504586813 - - -
14 Hb_002783_150 0.2542110007 - - cyclophilin [Hevea brasiliensis]
15 Hb_002716_110 0.2553277767 - - PREDICTED: interaptin [Jatropha curcas]
16 Hb_004357_060 0.2578005346 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
17 Hb_000230_170 0.2587177402 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
18 Hb_004007_200 0.2606551794 - - PREDICTED: BTB/POZ domain-containing protein NPY5 [Jatropha curcas]
19 Hb_033363_050 0.2631542139 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 isoform X2 [Jatropha curcas]
20 Hb_002183_080 0.2633147718 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_012239_050 Hb_012239_050 Hb_004648_110 Hb_004648_110 Hb_012239_050--Hb_004648_110 Hb_010691_010 Hb_010691_010 Hb_012239_050--Hb_010691_010 Hb_012132_020 Hb_012132_020 Hb_012239_050--Hb_012132_020 Hb_001098_030 Hb_001098_030 Hb_012239_050--Hb_001098_030 Hb_000679_030 Hb_000679_030 Hb_012239_050--Hb_000679_030 Hb_002603_110 Hb_002603_110 Hb_012239_050--Hb_002603_110 Hb_004648_110--Hb_001098_030 Hb_003911_030 Hb_003911_030 Hb_004648_110--Hb_003911_030 Hb_000271_080 Hb_000271_080 Hb_004648_110--Hb_000271_080 Hb_004648_110--Hb_002603_110 Hb_007254_030 Hb_007254_030 Hb_004648_110--Hb_007254_030 Hb_002000_120 Hb_002000_120 Hb_010691_010--Hb_002000_120 Hb_002475_150 Hb_002475_150 Hb_010691_010--Hb_002475_150 Hb_010691_010--Hb_012132_020 Hb_004864_010 Hb_004864_010 Hb_010691_010--Hb_004864_010 Hb_009615_180 Hb_009615_180 Hb_010691_010--Hb_009615_180 Hb_005183_040 Hb_005183_040 Hb_012132_020--Hb_005183_040 Hb_000210_040 Hb_000210_040 Hb_012132_020--Hb_000210_040 Hb_164945_020 Hb_164945_020 Hb_012132_020--Hb_164945_020 Hb_005493_010 Hb_005493_010 Hb_012132_020--Hb_005493_010 Hb_002716_110 Hb_002716_110 Hb_012132_020--Hb_002716_110 Hb_002817_050 Hb_002817_050 Hb_012132_020--Hb_002817_050 Hb_006836_030 Hb_006836_030 Hb_001098_030--Hb_006836_030 Hb_001975_040 Hb_001975_040 Hb_001098_030--Hb_001975_040 Hb_003181_060 Hb_003181_060 Hb_001098_030--Hb_003181_060 Hb_001098_030--Hb_002603_110 Hb_000679_030--Hb_002716_110 Hb_005488_130 Hb_005488_130 Hb_000679_030--Hb_005488_130 Hb_056196_010 Hb_056196_010 Hb_000679_030--Hb_056196_010 Hb_000679_030--Hb_164945_020 Hb_000069_690 Hb_000069_690 Hb_000679_030--Hb_000069_690 Hb_002397_050 Hb_002397_050 Hb_000679_030--Hb_002397_050 Hb_001975_030 Hb_001975_030 Hb_002603_110--Hb_001975_030 Hb_000483_100 Hb_000483_100 Hb_002603_110--Hb_000483_100 Hb_000008_060 Hb_000008_060 Hb_002603_110--Hb_000008_060 Hb_000086_390 Hb_000086_390 Hb_002603_110--Hb_000086_390 Hb_003226_200 Hb_003226_200 Hb_002603_110--Hb_003226_200 Hb_032568_010 Hb_032568_010 Hb_002603_110--Hb_032568_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 20.2552 17.1193 32.1865 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 34.5478 2.34955 14.4154 54.7965

CAGE analysis