Hb_002000_120

Information

Type -
Description -
Location Contig2000: 123973-132683
Sequence    

Annotation

kegg
ID tcc:TCM_028107
description DNA/RNA polymerases superfamily protein
nr
ID XP_007023829.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061GA43
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_028107 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002000_120 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_006916_180 0.1781454805 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
3 Hb_000094_050 0.2022561813 - - -
4 Hb_003645_050 0.2182872949 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_010691_010 0.2370130324 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
6 Hb_001210_100 0.2459239074 - - Gibberellin 20 oxidase, putative [Ricinus communis]
7 Hb_002217_290 0.2560649018 - - hypothetical protein JCGZ_19038 [Jatropha curcas]
8 Hb_000922_210 0.2567105886 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
9 Hb_001226_190 0.2701056133 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
10 Hb_000856_130 0.2729451474 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
11 Hb_005743_030 0.2886704001 - - hypothetical protein, partial [Pseudomonas fluorescens]
12 Hb_000965_010 0.2892579471 - - hypothetical protein VITISV_016917 [Vitis vinifera]
13 Hb_004864_010 0.2896193862 - - hypothetical protein CICLE_v10003960mg, partial [Citrus clementina]
14 Hb_002475_150 0.2940403404 - - PREDICTED: importin subunit beta-3-like [Jatropha curcas]
15 Hb_024714_040 0.3019738783 - - PREDICTED: DNA mismatch repair protein PMS1 [Jatropha curcas]
16 Hb_000668_130 0.3077792991 - - -
17 Hb_006922_070 0.3125169467 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
18 Hb_000731_120 0.3145892802 - - Beta-glucosidase, putative [Ricinus communis]
19 Hb_000685_090 0.3163633769 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
20 Hb_093824_010 0.31788272 - - PREDICTED: uncharacterized protein LOC103326132 [Prunus mume]

Gene co-expression network

sample Hb_002000_120 Hb_002000_120 Hb_006916_180 Hb_006916_180 Hb_002000_120--Hb_006916_180 Hb_000094_050 Hb_000094_050 Hb_002000_120--Hb_000094_050 Hb_003645_050 Hb_003645_050 Hb_002000_120--Hb_003645_050 Hb_010691_010 Hb_010691_010 Hb_002000_120--Hb_010691_010 Hb_001210_100 Hb_001210_100 Hb_002000_120--Hb_001210_100 Hb_002217_290 Hb_002217_290 Hb_002000_120--Hb_002217_290 Hb_023547_020 Hb_023547_020 Hb_006916_180--Hb_023547_020 Hb_005436_030 Hb_005436_030 Hb_006916_180--Hb_005436_030 Hb_006916_180--Hb_001210_100 Hb_006916_180--Hb_003645_050 Hb_001534_040 Hb_001534_040 Hb_006916_180--Hb_001534_040 Hb_093824_010 Hb_093824_010 Hb_000094_050--Hb_093824_010 Hb_000094_050--Hb_003645_050 Hb_000094_050--Hb_006916_180 Hb_000959_050 Hb_000959_050 Hb_000094_050--Hb_000959_050 Hb_000094_050--Hb_010691_010 Hb_000060_070 Hb_000060_070 Hb_003645_050--Hb_000060_070 Hb_001355_050 Hb_001355_050 Hb_003645_050--Hb_001355_050 Hb_008642_050 Hb_008642_050 Hb_003645_050--Hb_008642_050 Hb_012239_050 Hb_012239_050 Hb_010691_010--Hb_012239_050 Hb_002475_150 Hb_002475_150 Hb_010691_010--Hb_002475_150 Hb_012132_020 Hb_012132_020 Hb_010691_010--Hb_012132_020 Hb_004864_010 Hb_004864_010 Hb_010691_010--Hb_004864_010 Hb_009615_180 Hb_009615_180 Hb_010691_010--Hb_009615_180 Hb_001210_100--Hb_001534_040 Hb_003935_010 Hb_003935_010 Hb_001210_100--Hb_003935_010 Hb_005743_030 Hb_005743_030 Hb_001210_100--Hb_005743_030 Hb_001210_100--Hb_005436_030 Hb_000922_210 Hb_000922_210 Hb_002217_290--Hb_000922_210 Hb_130507_020 Hb_130507_020 Hb_002217_290--Hb_130507_020 Hb_001226_190 Hb_001226_190 Hb_002217_290--Hb_001226_190 Hb_000668_210 Hb_000668_210 Hb_002217_290--Hb_000668_210 Hb_001951_160 Hb_001951_160 Hb_002217_290--Hb_001951_160 Hb_024404_040 Hb_024404_040 Hb_002217_290--Hb_024404_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0088156 0.0131921 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0158975 0 0.0126381 0.033691

CAGE analysis