Hb_003935_010

Information

Type -
Description -
Location Contig3935: 6166-6833
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39404: 7678-9554 , PASA_asmbl_39405: 7772-9194
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003935_010 0.0 - - -
2 Hb_001226_190 0.177068123 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
3 Hb_001210_100 0.2325000387 - - Gibberellin 20 oxidase, putative [Ricinus communis]
4 Hb_136092_010 0.2451802487 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
5 Hb_001596_010 0.3103219873 - - hypothetical protein POPTR_0001s181102g, partial [Populus trichocarpa]
6 Hb_000340_050 0.3144657255 - - hypothetical protein EUGRSUZ_K033901, partial [Eucalyptus grandis]
7 Hb_006810_010 0.3186006906 - - hypothetical protein B456_012G018200 [Gossypium raimondii]
8 Hb_000039_200 0.3220975075 - - hypothetical protein JCGZ_21346 [Jatropha curcas]
9 Hb_002217_290 0.3258557585 - - hypothetical protein JCGZ_19038 [Jatropha curcas]
10 Hb_000922_210 0.3279144771 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
11 Hb_001534_040 0.3294132854 - - hypothetical protein JCGZ_08436 [Jatropha curcas]
12 Hb_002000_120 0.3499462698 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_004449_020 0.3563969779 - - PREDICTED: ATPase 10, plasma membrane-type isoform X3 [Elaeis guineensis]
14 Hb_011772_010 0.3592043751 - - -
15 Hb_019253_010 0.3626539855 - - DNA-binding family protein [Populus trichocarpa]
16 Hb_000237_240 0.3637739665 - - -
17 Hb_000175_020 0.3664505116 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005743_030 0.367845478 - - hypothetical protein, partial [Pseudomonas fluorescens]
19 Hb_003124_020 0.368258521 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
20 Hb_002374_500 0.3704097244 - - PREDICTED: putative F-box protein PP2-B12 [Gossypium raimondii]

Gene co-expression network

sample Hb_003935_010 Hb_003935_010 Hb_001226_190 Hb_001226_190 Hb_003935_010--Hb_001226_190 Hb_001210_100 Hb_001210_100 Hb_003935_010--Hb_001210_100 Hb_136092_010 Hb_136092_010 Hb_003935_010--Hb_136092_010 Hb_001596_010 Hb_001596_010 Hb_003935_010--Hb_001596_010 Hb_000340_050 Hb_000340_050 Hb_003935_010--Hb_000340_050 Hb_006810_010 Hb_006810_010 Hb_003935_010--Hb_006810_010 Hb_002217_290 Hb_002217_290 Hb_001226_190--Hb_002217_290 Hb_000922_210 Hb_000922_210 Hb_001226_190--Hb_000922_210 Hb_002000_120 Hb_002000_120 Hb_001226_190--Hb_002000_120 Hb_001226_190--Hb_001210_100 Hb_006922_070 Hb_006922_070 Hb_001226_190--Hb_006922_070 Hb_006916_180 Hb_006916_180 Hb_001210_100--Hb_006916_180 Hb_001534_040 Hb_001534_040 Hb_001210_100--Hb_001534_040 Hb_001210_100--Hb_002000_120 Hb_005743_030 Hb_005743_030 Hb_001210_100--Hb_005743_030 Hb_005436_030 Hb_005436_030 Hb_001210_100--Hb_005436_030 Hb_136092_010--Hb_001596_010 Hb_011772_010 Hb_011772_010 Hb_136092_010--Hb_011772_010 Hb_150366_010 Hb_150366_010 Hb_136092_010--Hb_150366_010 Hb_002800_020 Hb_002800_020 Hb_136092_010--Hb_002800_020 Hb_019253_010 Hb_019253_010 Hb_136092_010--Hb_019253_010 Hb_001596_010--Hb_002800_020 Hb_033095_050 Hb_033095_050 Hb_001596_010--Hb_033095_050 Hb_101624_010 Hb_101624_010 Hb_001596_010--Hb_101624_010 Hb_005031_010 Hb_005031_010 Hb_001596_010--Hb_005031_010 Hb_005542_170 Hb_005542_170 Hb_001596_010--Hb_005542_170 Hb_005803_040 Hb_005803_040 Hb_000340_050--Hb_005803_040 Hb_004449_020 Hb_004449_020 Hb_000340_050--Hb_004449_020 Hb_000039_200 Hb_000039_200 Hb_000340_050--Hb_000039_200 Hb_029904_010 Hb_029904_010 Hb_000340_050--Hb_029904_010 Hb_001001_110 Hb_001001_110 Hb_000340_050--Hb_001001_110 Hb_011576_010 Hb_011576_010 Hb_006810_010--Hb_011576_010 Hb_006810_010--Hb_001534_040 Hb_001949_010 Hb_001949_010 Hb_006810_010--Hb_001949_010 Hb_003095_110 Hb_003095_110 Hb_006810_010--Hb_003095_110 Hb_000457_130 Hb_000457_130 Hb_006810_010--Hb_000457_130 Hb_004218_310 Hb_004218_310 Hb_006810_010--Hb_004218_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0935134 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.223327 0 0.372627 0.207097

CAGE analysis