Hb_004449_020

Information

Type -
Description -
Location Contig4449: 18531-24696
Sequence    

Annotation

kegg
ID rcu:RCOM_1608600
description H(\+)-transporting atpase plant/fungi plasma membrane type, putative (EC:3.6.3.6)
nr
ID XP_010937230.1
description PREDICTED: ATPase 10, plasma membrane-type isoform X3 [Elaeis guineensis]
swissprot
ID Q43128
description ATPase 10, plasma membrane-type OS=Arabidopsis thaliana GN=AHA10 PE=2 SV=2
trembl
ID A0A078HQP4
description BnaC06g40340D protein OS=Brassica napus GN=BnaC06g40340D PE=3 SV=1
Gene Ontology
ID GO:0016021
description h(\+)-transporting atpase plant fungi plasma membrane

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004449_020 0.0 - - PREDICTED: ATPase 10, plasma membrane-type isoform X3 [Elaeis guineensis]
2 Hb_000039_200 0.2241157269 - - hypothetical protein JCGZ_21346 [Jatropha curcas]
3 Hb_000340_050 0.2486088805 - - hypothetical protein EUGRSUZ_K033901, partial [Eucalyptus grandis]
4 Hb_006810_010 0.2506125362 - - hypothetical protein B456_012G018200 [Gossypium raimondii]
5 Hb_001019_210 0.2516655704 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
6 Hb_000484_040 0.2651455638 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
7 Hb_000012_040 0.2664850448 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
8 Hb_004519_010 0.2664883193 - - PREDICTED: basic form of pathogenesis-related protein 1-like [Jatropha curcas]
9 Hb_000699_050 0.2685630339 - - -
10 Hb_029904_010 0.2759857078 - - PREDICTED: uncharacterized protein LOC105635075 [Jatropha curcas]
11 Hb_000265_080 0.2797097562 - - Vacuolar cation/proton exchanger, putative [Ricinus communis]
12 Hb_000844_090 0.2848611622 - - PREDICTED: cytochrome P450 82C4-like [Jatropha curcas]
13 Hb_000566_110 0.2853283035 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Prunus mume]
14 Hb_005455_010 0.2862884933 - - PREDICTED: probable acyl-activating enzyme 18, peroxisomal isoform X1 [Jatropha curcas]
15 Hb_000705_060 0.2880217049 - - hypothetical protein TRIUR3_06087 [Triticum urartu]
16 Hb_161728_010 0.2889986327 - - hypothetical protein JCGZ_11176 [Jatropha curcas]
17 Hb_177772_010 0.2904028676 - - PREDICTED: receptor-like protein 12 isoform X2 [Vitis vinifera]
18 Hb_007101_210 0.2909529182 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_001001_110 0.29367418 - - -
20 Hb_009296_060 0.2953007418 - - glutathione s-transferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004449_020 Hb_004449_020 Hb_000039_200 Hb_000039_200 Hb_004449_020--Hb_000039_200 Hb_000340_050 Hb_000340_050 Hb_004449_020--Hb_000340_050 Hb_006810_010 Hb_006810_010 Hb_004449_020--Hb_006810_010 Hb_001019_210 Hb_001019_210 Hb_004449_020--Hb_001019_210 Hb_000484_040 Hb_000484_040 Hb_004449_020--Hb_000484_040 Hb_000012_040 Hb_000012_040 Hb_004449_020--Hb_000012_040 Hb_007621_010 Hb_007621_010 Hb_000039_200--Hb_007621_010 Hb_005455_010 Hb_005455_010 Hb_000039_200--Hb_005455_010 Hb_000318_400 Hb_000318_400 Hb_000039_200--Hb_000318_400 Hb_003095_110 Hb_003095_110 Hb_000039_200--Hb_003095_110 Hb_000699_050 Hb_000699_050 Hb_000039_200--Hb_000699_050 Hb_005803_040 Hb_005803_040 Hb_000340_050--Hb_005803_040 Hb_000340_050--Hb_000039_200 Hb_003935_010 Hb_003935_010 Hb_000340_050--Hb_003935_010 Hb_029904_010 Hb_029904_010 Hb_000340_050--Hb_029904_010 Hb_001001_110 Hb_001001_110 Hb_000340_050--Hb_001001_110 Hb_011576_010 Hb_011576_010 Hb_006810_010--Hb_011576_010 Hb_001534_040 Hb_001534_040 Hb_006810_010--Hb_001534_040 Hb_001949_010 Hb_001949_010 Hb_006810_010--Hb_001949_010 Hb_006810_010--Hb_003095_110 Hb_000457_130 Hb_000457_130 Hb_006810_010--Hb_000457_130 Hb_004218_310 Hb_004218_310 Hb_006810_010--Hb_004218_310 Hb_004519_010 Hb_004519_010 Hb_001019_210--Hb_004519_010 Hb_000832_250 Hb_000832_250 Hb_001019_210--Hb_000832_250 Hb_000215_420 Hb_000215_420 Hb_001019_210--Hb_000215_420 Hb_079394_010 Hb_079394_010 Hb_001019_210--Hb_079394_010 Hb_106321_010 Hb_106321_010 Hb_001019_210--Hb_106321_010 Hb_000566_110 Hb_000566_110 Hb_001019_210--Hb_000566_110 Hb_001005_210 Hb_001005_210 Hb_000484_040--Hb_001005_210 Hb_032631_080 Hb_032631_080 Hb_000484_040--Hb_032631_080 Hb_000844_090 Hb_000844_090 Hb_000484_040--Hb_000844_090 Hb_001279_220 Hb_001279_220 Hb_000484_040--Hb_001279_220 Hb_001454_300 Hb_001454_300 Hb_000484_040--Hb_001454_300 Hb_001369_320 Hb_001369_320 Hb_000484_040--Hb_001369_320 Hb_000140_190 Hb_000140_190 Hb_000012_040--Hb_000140_190 Hb_002057_010 Hb_002057_010 Hb_000012_040--Hb_002057_010 Hb_001691_030 Hb_001691_030 Hb_000012_040--Hb_001691_030 Hb_001691_220 Hb_001691_220 Hb_000012_040--Hb_001691_220 Hb_000143_020 Hb_000143_020 Hb_000012_040--Hb_000143_020 Hb_000094_240 Hb_000094_240 Hb_000012_040--Hb_000094_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.156678 0.011587 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0284104 0.0541384 0.355431 0.120724

CAGE analysis