Hb_000340_050

Information

Type -
Description -
Location Contig340: 74159-75201
Sequence    

Annotation

kegg
ID pop:POPTR_0014s13470g
description POPTRDRAFT_572808; hypothetical protein
nr
ID KCW49928.1
description hypothetical protein EUGRSUZ_K033901, partial [Eucalyptus grandis]
swissprot
ID P51859
description Hepatoma-derived growth factor OS=Mus musculus GN=Hdgf PE=1 SV=2
trembl
ID A0A059A809
description Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_K033901 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35507: 53209-75394
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_050 0.0 - - hypothetical protein EUGRSUZ_K033901, partial [Eucalyptus grandis]
2 Hb_005803_040 0.2418262192 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
3 Hb_004449_020 0.2486088805 - - PREDICTED: ATPase 10, plasma membrane-type isoform X3 [Elaeis guineensis]
4 Hb_000039_200 0.2757007986 - - hypothetical protein JCGZ_21346 [Jatropha curcas]
5 Hb_003935_010 0.3144657255 - - -
6 Hb_029904_010 0.3172033568 - - PREDICTED: uncharacterized protein LOC105635075 [Jatropha curcas]
7 Hb_001001_110 0.3211743966 - - -
8 Hb_010883_130 0.3211758461 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210 [Jatropha curcas]
9 Hb_013691_050 0.3271959796 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
10 Hb_000764_040 0.3293802954 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
11 Hb_032496_010 0.3352791268 - - hypothetical protein POPTR_0012s10850g [Populus trichocarpa]
12 Hb_054467_010 0.3446258484 - - -
13 Hb_002774_110 0.3487250649 - - heat shock protein binding protein, putative [Ricinus communis]
14 Hb_001226_190 0.3510141138 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
15 Hb_001789_140 0.3539554925 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Citrus sinensis]
16 Hb_007199_010 0.3543185685 - - PREDICTED: protein kinase APK1A, chloroplastic [Nelumbo nucifera]
17 Hb_001210_100 0.3566070176 - - Gibberellin 20 oxidase, putative [Ricinus communis]
18 Hb_188487_010 0.3574120022 - - hypothetical protein JCGZ_24382 [Jatropha curcas]
19 Hb_082987_010 0.3641755892 - - hypothetical protein CICLE_v10030423mg [Citrus clementina]
20 Hb_000012_040 0.3674292817 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]

Gene co-expression network

sample Hb_000340_050 Hb_000340_050 Hb_005803_040 Hb_005803_040 Hb_000340_050--Hb_005803_040 Hb_004449_020 Hb_004449_020 Hb_000340_050--Hb_004449_020 Hb_000039_200 Hb_000039_200 Hb_000340_050--Hb_000039_200 Hb_003935_010 Hb_003935_010 Hb_000340_050--Hb_003935_010 Hb_029904_010 Hb_029904_010 Hb_000340_050--Hb_029904_010 Hb_001001_110 Hb_001001_110 Hb_000340_050--Hb_001001_110 Hb_010883_130 Hb_010883_130 Hb_005803_040--Hb_010883_130 Hb_000764_040 Hb_000764_040 Hb_005803_040--Hb_000764_040 Hb_000307_230 Hb_000307_230 Hb_005803_040--Hb_000307_230 Hb_172388_010 Hb_172388_010 Hb_005803_040--Hb_172388_010 Hb_000144_040 Hb_000144_040 Hb_005803_040--Hb_000144_040 Hb_004449_020--Hb_000039_200 Hb_006810_010 Hb_006810_010 Hb_004449_020--Hb_006810_010 Hb_001019_210 Hb_001019_210 Hb_004449_020--Hb_001019_210 Hb_000484_040 Hb_000484_040 Hb_004449_020--Hb_000484_040 Hb_000012_040 Hb_000012_040 Hb_004449_020--Hb_000012_040 Hb_007621_010 Hb_007621_010 Hb_000039_200--Hb_007621_010 Hb_005455_010 Hb_005455_010 Hb_000039_200--Hb_005455_010 Hb_000318_400 Hb_000318_400 Hb_000039_200--Hb_000318_400 Hb_003095_110 Hb_003095_110 Hb_000039_200--Hb_003095_110 Hb_000699_050 Hb_000699_050 Hb_000039_200--Hb_000699_050 Hb_001226_190 Hb_001226_190 Hb_003935_010--Hb_001226_190 Hb_001210_100 Hb_001210_100 Hb_003935_010--Hb_001210_100 Hb_136092_010 Hb_136092_010 Hb_003935_010--Hb_136092_010 Hb_001596_010 Hb_001596_010 Hb_003935_010--Hb_001596_010 Hb_003935_010--Hb_006810_010 Hb_001004_100 Hb_001004_100 Hb_029904_010--Hb_001004_100 Hb_000453_240 Hb_000453_240 Hb_029904_010--Hb_000453_240 Hb_001123_010 Hb_001123_010 Hb_029904_010--Hb_001123_010 Hb_003517_010 Hb_003517_010 Hb_029904_010--Hb_003517_010 Hb_001776_190 Hb_001776_190 Hb_029904_010--Hb_001776_190 Hb_000061_090 Hb_000061_090 Hb_029904_010--Hb_000061_090 Hb_013691_050 Hb_013691_050 Hb_001001_110--Hb_013691_050 Hb_001085_210 Hb_001085_210 Hb_001001_110--Hb_001085_210 Hb_188487_010 Hb_188487_010 Hb_001001_110--Hb_188487_010 Hb_001096_020 Hb_001096_020 Hb_001001_110--Hb_001096_020 Hb_185058_020 Hb_185058_020 Hb_001001_110--Hb_185058_020 Hb_012753_010 Hb_012753_010 Hb_001001_110--Hb_012753_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.966338 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.08164 1.18585 2.51255 1.22487

CAGE analysis