Hb_001776_190

Information

Type -
Description -
Location Contig1776: 142752-146115
Sequence    

Annotation

kegg
ID pmum:103330647
description protein kinase 2A, chloroplastic-like
nr
ID XP_012075969.1
description PREDICTED: protein kinase 2A, chloroplastic-like [Jatropha curcas]
swissprot
ID O49839
description Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=2 SV=1
trembl
ID A0A067KE48
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11061 PE=3 SV=1
Gene Ontology
ID GO:0004672
description protein kinase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17086: 142938-143604 , PASA_asmbl_17087: 145212-145961
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001776_190 0.0 - - PREDICTED: protein kinase 2A, chloroplastic-like [Jatropha curcas]
2 Hb_002284_190 0.1575503291 - - PREDICTED: glutamate receptor 3.3 [Jatropha curcas]
3 Hb_029921_030 0.1873909122 - - conserved hypothetical protein [Ricinus communis]
4 Hb_008759_020 0.2033091601 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 2-like [Jatropha curcas]
5 Hb_029904_010 0.2062990095 - - PREDICTED: uncharacterized protein LOC105635075 [Jatropha curcas]
6 Hb_000116_590 0.2131694364 - - PREDICTED: splicing factor, suppressor of white-apricot homolog [Malus domestica]
7 Hb_011633_040 0.2152809552 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
8 Hb_000853_060 0.2179990753 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
9 Hb_158092_060 0.2236397385 - - aspartate semialdehyde dehydrogenase, putative [Ricinus communis]
10 Hb_000011_420 0.2248292666 - - PREDICTED: GDSL esterase/lipase At1g29660-like [Citrus sinensis]
11 Hb_000879_190 0.2249680575 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001004_100 0.2266171442 - - ATP binding protein, putative [Ricinus communis]
13 Hb_000300_130 0.2276419238 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
14 Hb_007153_040 0.2292768678 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
15 Hb_000152_810 0.229616799 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
16 Hb_002025_350 0.2302939822 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
17 Hb_001206_090 0.2328823977 - - pyruvate decarboxylase [Hevea brasiliensis]
18 Hb_074506_010 0.2338027335 - - JHL25H03.10 [Jatropha curcas]
19 Hb_000421_270 0.2383237391 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
20 Hb_009545_020 0.2429125636 - - PREDICTED: uncharacterized protein LOC105632008 [Jatropha curcas]

Gene co-expression network

sample Hb_001776_190 Hb_001776_190 Hb_002284_190 Hb_002284_190 Hb_001776_190--Hb_002284_190 Hb_029921_030 Hb_029921_030 Hb_001776_190--Hb_029921_030 Hb_008759_020 Hb_008759_020 Hb_001776_190--Hb_008759_020 Hb_029904_010 Hb_029904_010 Hb_001776_190--Hb_029904_010 Hb_000116_590 Hb_000116_590 Hb_001776_190--Hb_000116_590 Hb_011633_040 Hb_011633_040 Hb_001776_190--Hb_011633_040 Hb_002284_190--Hb_008759_020 Hb_000671_160 Hb_000671_160 Hb_002284_190--Hb_000671_160 Hb_007153_040 Hb_007153_040 Hb_002284_190--Hb_007153_040 Hb_006538_190 Hb_006538_190 Hb_002284_190--Hb_006538_190 Hb_000694_060 Hb_000694_060 Hb_002284_190--Hb_000694_060 Hb_029921_030--Hb_011633_040 Hb_002471_260 Hb_002471_260 Hb_029921_030--Hb_002471_260 Hb_003972_060 Hb_003972_060 Hb_029921_030--Hb_003972_060 Hb_000421_270 Hb_000421_270 Hb_029921_030--Hb_000421_270 Hb_029921_030--Hb_006538_190 Hb_002660_120 Hb_002660_120 Hb_008759_020--Hb_002660_120 Hb_008759_020--Hb_000694_060 Hb_003687_220 Hb_003687_220 Hb_008759_020--Hb_003687_220 Hb_003120_040 Hb_003120_040 Hb_008759_020--Hb_003120_040 Hb_001004_100 Hb_001004_100 Hb_029904_010--Hb_001004_100 Hb_000453_240 Hb_000453_240 Hb_029904_010--Hb_000453_240 Hb_001123_010 Hb_001123_010 Hb_029904_010--Hb_001123_010 Hb_003517_010 Hb_003517_010 Hb_029904_010--Hb_003517_010 Hb_000061_090 Hb_000061_090 Hb_029904_010--Hb_000061_090 Hb_000116_590--Hb_000421_270 Hb_002025_350 Hb_002025_350 Hb_000116_590--Hb_002025_350 Hb_002835_350 Hb_002835_350 Hb_000116_590--Hb_002835_350 Hb_001405_150 Hb_001405_150 Hb_000116_590--Hb_001405_150 Hb_032631_050 Hb_032631_050 Hb_000116_590--Hb_032631_050 Hb_003592_030 Hb_003592_030 Hb_000116_590--Hb_003592_030 Hb_002539_010 Hb_002539_010 Hb_011633_040--Hb_002539_010 Hb_027380_190 Hb_027380_190 Hb_011633_040--Hb_027380_190 Hb_152868_030 Hb_152868_030 Hb_011633_040--Hb_152868_030 Hb_012545_090 Hb_012545_090 Hb_011633_040--Hb_012545_090 Hb_001140_360 Hb_001140_360 Hb_011633_040--Hb_001140_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0118976 7.33039 4.58512 4.44541 0.0787598 0.032533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.703904 8.30722 5.62767 26.7314 3.44795

CAGE analysis