Hb_000453_240

Information

Type rubber biosynthesis
Description Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
Location Contig453: 177035-183077
Sequence    

Annotation

kegg
ID rcu:RCOM_0784670
description 4-diphosphocytidyl-2-C-methyl-d-erythritol kinase, putative (EC:2.7.1.148)
nr
ID BAF98293.1
description 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
swissprot
ID P93841
description 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic (Fragment) OS=Solanum lycopersicum GN=ISPE PE=1 SV=1
trembl
ID A9ZN11
description 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase OS=Hevea brasiliensis GN=HbCMK PE=2 SV=1
Gene Ontology
ID GO:0005524
description 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43280: 177110-183011 , PASA_asmbl_43281: 181102-181241
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000453_240 0.0 rubber biosynthesis Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
2 Hb_028872_150 0.1333777142 - - PREDICTED: uncharacterized protein LOC105137493 [Populus euphratica]
3 Hb_001040_150 0.1533638472 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000574_250 0.1693223165 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
5 Hb_001123_010 0.1702064257 - - conserved hypothetical protein [Ricinus communis]
6 Hb_152868_030 0.1773956592 - - abhydrolase domain containing, putative [Ricinus communis]
7 Hb_006700_040 0.1788334957 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
8 Hb_007423_020 0.1835841017 - - 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
9 Hb_033594_100 0.1861720992 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_029904_010 0.1862769574 - - PREDICTED: uncharacterized protein LOC105635075 [Jatropha curcas]
11 Hb_074506_010 0.1862845017 - - JHL25H03.10 [Jatropha curcas]
12 Hb_178968_080 0.1889175138 - - PREDICTED: serine/threonine-protein kinase OSR1 isoform X2 [Jatropha curcas]
13 Hb_000625_030 0.1896754996 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
14 Hb_101449_010 0.1944228214 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
15 Hb_000720_090 0.1946200154 transcription factor TF Family: MYB myb, putative [Ricinus communis]
16 Hb_001004_100 0.1946271958 - - ATP binding protein, putative [Ricinus communis]
17 Hb_002232_160 0.1968722037 - - Transaminase mtnE, putative [Ricinus communis]
18 Hb_000138_020 0.2001374772 - - PREDICTED: peroxidase A2-like [Jatropha curcas]
19 Hb_006846_120 0.2029846183 - - Succinate/fumarate mitochondrial transporter, putative [Ricinus communis]
20 Hb_004657_060 0.2056814844 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000453_240 Hb_000453_240 Hb_028872_150 Hb_028872_150 Hb_000453_240--Hb_028872_150 Hb_001040_150 Hb_001040_150 Hb_000453_240--Hb_001040_150 Hb_000574_250 Hb_000574_250 Hb_000453_240--Hb_000574_250 Hb_001123_010 Hb_001123_010 Hb_000453_240--Hb_001123_010 Hb_152868_030 Hb_152868_030 Hb_000453_240--Hb_152868_030 Hb_006700_040 Hb_006700_040 Hb_000453_240--Hb_006700_040 Hb_001673_100 Hb_001673_100 Hb_028872_150--Hb_001673_100 Hb_002170_020 Hb_002170_020 Hb_028872_150--Hb_002170_020 Hb_001510_020 Hb_001510_020 Hb_028872_150--Hb_001510_020 Hb_027380_190 Hb_027380_190 Hb_028872_150--Hb_027380_190 Hb_028872_150--Hb_001040_150 Hb_006185_030 Hb_006185_030 Hb_001040_150--Hb_006185_030 Hb_009803_020 Hb_009803_020 Hb_001040_150--Hb_009803_020 Hb_098533_010 Hb_098533_010 Hb_001040_150--Hb_098533_010 Hb_007229_050 Hb_007229_050 Hb_001040_150--Hb_007229_050 Hb_178968_080 Hb_178968_080 Hb_001040_150--Hb_178968_080 Hb_000625_030 Hb_000625_030 Hb_001040_150--Hb_000625_030 Hb_033594_100 Hb_033594_100 Hb_000574_250--Hb_033594_100 Hb_005288_060 Hb_005288_060 Hb_000574_250--Hb_005288_060 Hb_060658_010 Hb_060658_010 Hb_000574_250--Hb_060658_010 Hb_000574_250--Hb_001040_150 Hb_000574_250--Hb_006700_040 Hb_001004_100 Hb_001004_100 Hb_001123_010--Hb_001004_100 Hb_000138_020 Hb_000138_020 Hb_001123_010--Hb_000138_020 Hb_006141_030 Hb_006141_030 Hb_001123_010--Hb_006141_030 Hb_002026_080 Hb_002026_080 Hb_001123_010--Hb_002026_080 Hb_012753_190 Hb_012753_190 Hb_001123_010--Hb_012753_190 Hb_152868_030--Hb_027380_190 Hb_005015_110 Hb_005015_110 Hb_152868_030--Hb_005015_110 Hb_152868_030--Hb_002170_020 Hb_003025_030 Hb_003025_030 Hb_152868_030--Hb_003025_030 Hb_000465_150 Hb_000465_150 Hb_152868_030--Hb_000465_150 Hb_011633_040 Hb_011633_040 Hb_152868_030--Hb_011633_040 Hb_011853_010 Hb_011853_010 Hb_006700_040--Hb_011853_010 Hb_006700_040--Hb_001040_150 Hb_006700_040--Hb_033594_100 Hb_126398_020 Hb_126398_020 Hb_006700_040--Hb_126398_020 Hb_006700_040--Hb_152868_030 Hb_000656_200 Hb_000656_200 Hb_006700_040--Hb_000656_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.349911 2.43981 3.94607 6.51596 0.065729 0.0472502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.90261 2.72813 3.1316 18.3351 10.866

CAGE analysis