Hb_002170_020

Information

Type transcription factor
Description TF Family: MYB
Location Contig2170: 75545-77922
Sequence    

Annotation

kegg
ID rcu:RCOM_0213970
description DNA binding protein, putative
nr
ID AAU06309.1
description MYB transcription factor [Hevea brasiliensis]
swissprot
ID Q8S9H7
description Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1
trembl
ID Q66RN1
description MYB transcription factor OS=Hevea brasiliensis GN=MYB PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor divaricata-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22405: 75566-77777
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002170_020 0.0 transcription factor TF Family: MYB MYB transcription factor [Hevea brasiliensis]
2 Hb_009535_030 0.1194536282 - - CP2 [Hevea brasiliensis]
3 Hb_005016_010 0.1251709157 - - AMP dependent CoA ligase, putative [Ricinus communis]
4 Hb_000683_050 0.1253215887 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
5 Hb_004030_060 0.134933917 - - receptor protein kinase zmpk1, putative [Ricinus communis]
6 Hb_006683_020 0.1380452992 - - PREDICTED: nucleosome assembly protein 1;4 [Jatropha curcas]
7 Hb_011872_020 0.1389626584 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH128 [Jatropha curcas]
8 Hb_177215_030 0.1402951472 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
9 Hb_005914_140 0.1414341619 - - PREDICTED: uncharacterized protein LOC105632183 [Jatropha curcas]
10 Hb_010390_010 0.1418429119 - - casein kinase, putative [Ricinus communis]
11 Hb_007229_050 0.1422423528 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
12 Hb_000258_050 0.1469165193 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X2 [Jatropha curcas]
13 Hb_002235_310 0.1476521124 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
14 Hb_001014_190 0.1496965024 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
15 Hb_007537_030 0.1497711015 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
16 Hb_029584_100 0.1500247172 - - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [Gossypium arboreum]
17 Hb_152868_030 0.1514294801 - - abhydrolase domain containing, putative [Ricinus communis]
18 Hb_000139_140 0.1517503239 - - Acyl-CoA synthetase [Ricinus communis]
19 Hb_000125_180 0.1536390921 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
20 Hb_000337_010 0.1539749591 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002170_020 Hb_002170_020 Hb_009535_030 Hb_009535_030 Hb_002170_020--Hb_009535_030 Hb_005016_010 Hb_005016_010 Hb_002170_020--Hb_005016_010 Hb_000683_050 Hb_000683_050 Hb_002170_020--Hb_000683_050 Hb_004030_060 Hb_004030_060 Hb_002170_020--Hb_004030_060 Hb_006683_020 Hb_006683_020 Hb_002170_020--Hb_006683_020 Hb_011872_020 Hb_011872_020 Hb_002170_020--Hb_011872_020 Hb_029584_100 Hb_029584_100 Hb_009535_030--Hb_029584_100 Hb_009535_030--Hb_004030_060 Hb_001235_130 Hb_001235_130 Hb_009535_030--Hb_001235_130 Hb_001247_270 Hb_001247_270 Hb_009535_030--Hb_001247_270 Hb_007229_050 Hb_007229_050 Hb_009535_030--Hb_007229_050 Hb_001473_170 Hb_001473_170 Hb_009535_030--Hb_001473_170 Hb_180378_010 Hb_180378_010 Hb_005016_010--Hb_180378_010 Hb_000258_050 Hb_000258_050 Hb_005016_010--Hb_000258_050 Hb_002615_030 Hb_002615_030 Hb_005016_010--Hb_002615_030 Hb_010390_010 Hb_010390_010 Hb_005016_010--Hb_010390_010 Hb_001951_060 Hb_001951_060 Hb_005016_010--Hb_001951_060 Hb_177215_030 Hb_177215_030 Hb_005016_010--Hb_177215_030 Hb_007416_070 Hb_007416_070 Hb_000683_050--Hb_007416_070 Hb_000494_030 Hb_000494_030 Hb_000683_050--Hb_000494_030 Hb_000683_050--Hb_004030_060 Hb_001811_170 Hb_001811_170 Hb_000683_050--Hb_001811_170 Hb_000683_050--Hb_010390_010 Hb_005854_040 Hb_005854_040 Hb_000683_050--Hb_005854_040 Hb_000157_140 Hb_000157_140 Hb_004030_060--Hb_000157_140 Hb_004030_060--Hb_000494_030 Hb_004030_060--Hb_010390_010 Hb_004030_060--Hb_005854_040 Hb_001097_040 Hb_001097_040 Hb_006683_020--Hb_001097_040 Hb_016734_010 Hb_016734_010 Hb_006683_020--Hb_016734_010 Hb_019280_010 Hb_019280_010 Hb_006683_020--Hb_019280_010 Hb_006683_020--Hb_000683_050 Hb_000701_030 Hb_000701_030 Hb_006683_020--Hb_000701_030 Hb_005914_140 Hb_005914_140 Hb_006683_020--Hb_005914_140 Hb_011872_020--Hb_005016_010 Hb_011872_020--Hb_177215_030 Hb_011872_020--Hb_000258_050 Hb_002660_120 Hb_002660_120 Hb_011872_020--Hb_002660_120 Hb_006816_480 Hb_006816_480 Hb_011872_020--Hb_006816_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.26842 18.1595 11.1581 33.7953 1.32248 3.5697
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.18647 9.25473 11.6721 33.3402 20.7475

CAGE analysis