Hb_028872_150

Information

Type -
Description -
Location Contig28872: 102928-105930
Sequence    

Annotation

kegg
ID pop:POPTR_0010s06670g
description POPTRDRAFT_804871; hypothetical protein
nr
ID XP_011041553.1
description PREDICTED: uncharacterized protein LOC105137493 [Populus euphratica]
swissprot
ID O32107
description Uncharacterized membrane protein YuiD OS=Bacillus subtilis (strain 168) GN=yuiD PE=4 SV=1
trembl
ID B9HTA9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s06670g PE=4 SV=2
Gene Ontology
ID GO:0016020
description membrane protein yuid

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30127: 103195-103714 , PASA_asmbl_30128: 104620-105850
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028872_150 0.0 - - PREDICTED: uncharacterized protein LOC105137493 [Populus euphratica]
2 Hb_000453_240 0.1333777142 rubber biosynthesis Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
3 Hb_001673_100 0.1556705019 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Jatropha curcas]
4 Hb_002170_020 0.1596366738 transcription factor TF Family: MYB MYB transcription factor [Hevea brasiliensis]
5 Hb_001510_020 0.1633313026 - - Diaminopimelate epimerase, putative [Ricinus communis]
6 Hb_027380_190 0.1634617112 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
7 Hb_001040_150 0.1646700773 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000548_070 0.1706765324 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
9 Hb_000181_460 0.1724337342 - - cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis]
10 Hb_002539_010 0.1772255332 - - hypothetical protein JCGZ_15711 [Jatropha curcas]
11 Hb_002471_260 0.1773699834 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105634154 [Jatropha curcas]
12 Hb_009803_020 0.1818069098 - - hypothetical protein PRUPE_ppa006317mg [Prunus persica]
13 Hb_152868_030 0.1833528224 - - abhydrolase domain containing, putative [Ricinus communis]
14 Hb_001769_060 0.1842705329 - - PREDICTED: F-box protein At3g12350 isoform X1 [Jatropha curcas]
15 Hb_005016_010 0.1860735524 - - AMP dependent CoA ligase, putative [Ricinus communis]
16 Hb_002631_130 0.1866856123 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
17 Hb_023827_020 0.1886482742 - - beta-1,3-glucanase 1 [Ziziphus jujuba]
18 Hb_002232_160 0.1889030765 - - Transaminase mtnE, putative [Ricinus communis]
19 Hb_177215_030 0.1897863007 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
20 Hb_100147_010 0.1908656761 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]

Gene co-expression network

sample Hb_028872_150 Hb_028872_150 Hb_000453_240 Hb_000453_240 Hb_028872_150--Hb_000453_240 Hb_001673_100 Hb_001673_100 Hb_028872_150--Hb_001673_100 Hb_002170_020 Hb_002170_020 Hb_028872_150--Hb_002170_020 Hb_001510_020 Hb_001510_020 Hb_028872_150--Hb_001510_020 Hb_027380_190 Hb_027380_190 Hb_028872_150--Hb_027380_190 Hb_001040_150 Hb_001040_150 Hb_028872_150--Hb_001040_150 Hb_000453_240--Hb_001040_150 Hb_000574_250 Hb_000574_250 Hb_000453_240--Hb_000574_250 Hb_001123_010 Hb_001123_010 Hb_000453_240--Hb_001123_010 Hb_152868_030 Hb_152868_030 Hb_000453_240--Hb_152868_030 Hb_006700_040 Hb_006700_040 Hb_000453_240--Hb_006700_040 Hb_002908_060 Hb_002908_060 Hb_001673_100--Hb_002908_060 Hb_002631_130 Hb_002631_130 Hb_001673_100--Hb_002631_130 Hb_000548_070 Hb_000548_070 Hb_001673_100--Hb_000548_070 Hb_003098_080 Hb_003098_080 Hb_001673_100--Hb_003098_080 Hb_000950_010 Hb_000950_010 Hb_001673_100--Hb_000950_010 Hb_004870_040 Hb_004870_040 Hb_001673_100--Hb_004870_040 Hb_009535_030 Hb_009535_030 Hb_002170_020--Hb_009535_030 Hb_005016_010 Hb_005016_010 Hb_002170_020--Hb_005016_010 Hb_000683_050 Hb_000683_050 Hb_002170_020--Hb_000683_050 Hb_004030_060 Hb_004030_060 Hb_002170_020--Hb_004030_060 Hb_006683_020 Hb_006683_020 Hb_002170_020--Hb_006683_020 Hb_011872_020 Hb_011872_020 Hb_002170_020--Hb_011872_020 Hb_001510_020--Hb_000548_070 Hb_001728_140 Hb_001728_140 Hb_001510_020--Hb_001728_140 Hb_002477_290 Hb_002477_290 Hb_001510_020--Hb_002477_290 Hb_000684_520 Hb_000684_520 Hb_001510_020--Hb_000684_520 Hb_000210_060 Hb_000210_060 Hb_001510_020--Hb_000210_060 Hb_000251_030 Hb_000251_030 Hb_001510_020--Hb_000251_030 Hb_027380_190--Hb_152868_030 Hb_000172_280 Hb_000172_280 Hb_027380_190--Hb_000172_280 Hb_001817_100 Hb_001817_100 Hb_027380_190--Hb_001817_100 Hb_000465_150 Hb_000465_150 Hb_027380_190--Hb_000465_150 Hb_000907_150 Hb_000907_150 Hb_027380_190--Hb_000907_150 Hb_007590_090 Hb_007590_090 Hb_027380_190--Hb_007590_090 Hb_006185_030 Hb_006185_030 Hb_001040_150--Hb_006185_030 Hb_009803_020 Hb_009803_020 Hb_001040_150--Hb_009803_020 Hb_098533_010 Hb_098533_010 Hb_001040_150--Hb_098533_010 Hb_007229_050 Hb_007229_050 Hb_001040_150--Hb_007229_050 Hb_178968_080 Hb_178968_080 Hb_001040_150--Hb_178968_080 Hb_000625_030 Hb_000625_030 Hb_001040_150--Hb_000625_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.301705 0.877167 1.5969 4.56597 0.047759 0.226956
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.790163 1.73106 1.78662 6.45806 3.87911

CAGE analysis