Hb_001123_010

Information

Type -
Description -
Location Contig1123: 5390-9161
Sequence    

Annotation

kegg
ID rcu:RCOM_1437500
description hypothetical protein
nr
ID XP_002512622.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8GZA4
description CBS domain-containing protein CBSX6 OS=Arabidopsis thaliana GN=CBSX6 PE=1 SV=1
trembl
ID B9RFV3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001004_100 0.1392735524 - - ATP binding protein, putative [Ricinus communis]
3 Hb_000138_020 0.1533258885 - - PREDICTED: peroxidase A2-like [Jatropha curcas]
4 Hb_006141_030 0.164546395 - - -
5 Hb_000453_240 0.1702064257 rubber biosynthesis Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
6 Hb_002026_080 0.1718595046 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
7 Hb_012753_190 0.1779647069 - - PREDICTED: protein HAPLESS 2 [Populus euphratica]
8 Hb_000653_010 0.1824144769 - - hypothetical protein CICLE_v10033238mg [Citrus clementina]
9 Hb_000816_020 0.1943633003 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
10 Hb_029904_010 0.1961895547 - - PREDICTED: uncharacterized protein LOC105635075 [Jatropha curcas]
11 Hb_002835_350 0.1969740511 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
12 Hb_000922_010 0.1977005802 - - hypothetical protein JCGZ_11488 [Jatropha curcas]
13 Hb_000834_040 0.1993721854 - - PREDICTED: ras-related protein Rab7 [Cucumis melo]
14 Hb_002527_050 0.1999801087 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
15 Hb_011200_020 0.2002984285 - - aldo-keto reductase, putative [Ricinus communis]
16 Hb_004495_020 0.2020214604 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
17 Hb_003640_010 0.203465743 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
18 Hb_012545_090 0.2035521691 - - hypothetical protein JCGZ_04320 [Jatropha curcas]
19 Hb_028872_150 0.2038835816 - - PREDICTED: uncharacterized protein LOC105137493 [Populus euphratica]
20 Hb_000005_230 0.2060621104 - - hypothetical protein POPTR_0009s01160g [Populus trichocarpa]

Gene co-expression network

sample Hb_001123_010 Hb_001123_010 Hb_001004_100 Hb_001004_100 Hb_001123_010--Hb_001004_100 Hb_000138_020 Hb_000138_020 Hb_001123_010--Hb_000138_020 Hb_006141_030 Hb_006141_030 Hb_001123_010--Hb_006141_030 Hb_000453_240 Hb_000453_240 Hb_001123_010--Hb_000453_240 Hb_002026_080 Hb_002026_080 Hb_001123_010--Hb_002026_080 Hb_012753_190 Hb_012753_190 Hb_001123_010--Hb_012753_190 Hb_001004_100--Hb_012753_190 Hb_158092_060 Hb_158092_060 Hb_001004_100--Hb_158092_060 Hb_029904_010 Hb_029904_010 Hb_001004_100--Hb_029904_010 Hb_002849_150 Hb_002849_150 Hb_001004_100--Hb_002849_150 Hb_000653_010 Hb_000653_010 Hb_001004_100--Hb_000653_010 Hb_000138_020--Hb_000653_010 Hb_033594_100 Hb_033594_100 Hb_000138_020--Hb_033594_100 Hb_032225_040 Hb_032225_040 Hb_000138_020--Hb_032225_040 Hb_000816_020 Hb_000816_020 Hb_000138_020--Hb_000816_020 Hb_003640_010 Hb_003640_010 Hb_000138_020--Hb_003640_010 Hb_006141_030--Hb_012753_190 Hb_012545_090 Hb_012545_090 Hb_006141_030--Hb_012545_090 Hb_002835_350 Hb_002835_350 Hb_006141_030--Hb_002835_350 Hb_002539_010 Hb_002539_010 Hb_006141_030--Hb_002539_010 Hb_000116_120 Hb_000116_120 Hb_006141_030--Hb_000116_120 Hb_028872_150 Hb_028872_150 Hb_000453_240--Hb_028872_150 Hb_001040_150 Hb_001040_150 Hb_000453_240--Hb_001040_150 Hb_000574_250 Hb_000574_250 Hb_000453_240--Hb_000574_250 Hb_152868_030 Hb_152868_030 Hb_000453_240--Hb_152868_030 Hb_006700_040 Hb_006700_040 Hb_000453_240--Hb_006700_040 Hb_000793_040 Hb_000793_040 Hb_002026_080--Hb_000793_040 Hb_001486_060 Hb_001486_060 Hb_002026_080--Hb_001486_060 Hb_000834_040 Hb_000834_040 Hb_002026_080--Hb_000834_040 Hb_000818_080 Hb_000818_080 Hb_002026_080--Hb_000818_080 Hb_000702_060 Hb_000702_060 Hb_002026_080--Hb_000702_060 Hb_001493_020 Hb_001493_020 Hb_002026_080--Hb_001493_020 Hb_012753_190--Hb_000653_010 Hb_007101_210 Hb_007101_210 Hb_012753_190--Hb_007101_210 Hb_000230_230 Hb_000230_230 Hb_012753_190--Hb_000230_230 Hb_001268_330 Hb_001268_330 Hb_012753_190--Hb_001268_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.180221 4.4875 3.18932 9.32314 0.185901 0.610979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.47968 1.16417 4.39241 27.7376 7.56573

CAGE analysis