Hb_029904_010

Information

Type -
Description -
Location Contig29904: 10518-13271
Sequence    

Annotation

kegg
ID cit:102628765
description neurogenic locus protein delta-like
nr
ID XP_012073457.1
description PREDICTED: uncharacterized protein LOC105635075 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KY33
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06226 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31264: 13883-19067
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029904_010 0.0 - - PREDICTED: uncharacterized protein LOC105635075 [Jatropha curcas]
2 Hb_001004_100 0.1655301211 - - ATP binding protein, putative [Ricinus communis]
3 Hb_000453_240 0.1862769574 rubber biosynthesis Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
4 Hb_001123_010 0.1961895547 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003517_010 0.2031078161 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
6 Hb_001776_190 0.2062990095 - - PREDICTED: protein kinase 2A, chloroplastic-like [Jatropha curcas]
7 Hb_000061_090 0.2138872091 - - hypothetical protein B456_003G0981001, partial [Gossypium raimondii]
8 Hb_007423_020 0.2160214789 - - 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
9 Hb_004800_220 0.2178998597 - - PREDICTED: random slug protein 5 [Jatropha curcas]
10 Hb_000011_420 0.2202715282 - - PREDICTED: GDSL esterase/lipase At1g29660-like [Citrus sinensis]
11 Hb_074506_010 0.2239441503 - - JHL25H03.10 [Jatropha curcas]
12 Hb_012753_190 0.226117784 - - PREDICTED: protein HAPLESS 2 [Populus euphratica]
13 Hb_000879_190 0.2348207586 - - conserved hypothetical protein [Ricinus communis]
14 Hb_008145_010 0.2351021932 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
15 Hb_152868_030 0.2358320314 - - abhydrolase domain containing, putative [Ricinus communis]
16 Hb_000265_080 0.2401852089 - - Vacuolar cation/proton exchanger, putative [Ricinus communis]
17 Hb_005389_190 0.2408069914 - - glutamate receptor 2 plant, putative [Ricinus communis]
18 Hb_006141_030 0.2447734187 - - -
19 Hb_149515_010 0.2461524243 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
20 Hb_000453_130 0.2461960064 - - PREDICTED: protein kinase 2A, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_029904_010 Hb_029904_010 Hb_001004_100 Hb_001004_100 Hb_029904_010--Hb_001004_100 Hb_000453_240 Hb_000453_240 Hb_029904_010--Hb_000453_240 Hb_001123_010 Hb_001123_010 Hb_029904_010--Hb_001123_010 Hb_003517_010 Hb_003517_010 Hb_029904_010--Hb_003517_010 Hb_001776_190 Hb_001776_190 Hb_029904_010--Hb_001776_190 Hb_000061_090 Hb_000061_090 Hb_029904_010--Hb_000061_090 Hb_001004_100--Hb_001123_010 Hb_012753_190 Hb_012753_190 Hb_001004_100--Hb_012753_190 Hb_158092_060 Hb_158092_060 Hb_001004_100--Hb_158092_060 Hb_002849_150 Hb_002849_150 Hb_001004_100--Hb_002849_150 Hb_000653_010 Hb_000653_010 Hb_001004_100--Hb_000653_010 Hb_028872_150 Hb_028872_150 Hb_000453_240--Hb_028872_150 Hb_001040_150 Hb_001040_150 Hb_000453_240--Hb_001040_150 Hb_000574_250 Hb_000574_250 Hb_000453_240--Hb_000574_250 Hb_000453_240--Hb_001123_010 Hb_152868_030 Hb_152868_030 Hb_000453_240--Hb_152868_030 Hb_006700_040 Hb_006700_040 Hb_000453_240--Hb_006700_040 Hb_000138_020 Hb_000138_020 Hb_001123_010--Hb_000138_020 Hb_006141_030 Hb_006141_030 Hb_001123_010--Hb_006141_030 Hb_002026_080 Hb_002026_080 Hb_001123_010--Hb_002026_080 Hb_001123_010--Hb_012753_190 Hb_008749_090 Hb_008749_090 Hb_003517_010--Hb_008749_090 Hb_149515_010 Hb_149515_010 Hb_003517_010--Hb_149515_010 Hb_005389_190 Hb_005389_190 Hb_003517_010--Hb_005389_190 Hb_000816_020 Hb_000816_020 Hb_003517_010--Hb_000816_020 Hb_006096_020 Hb_006096_020 Hb_003517_010--Hb_006096_020 Hb_002284_190 Hb_002284_190 Hb_001776_190--Hb_002284_190 Hb_029921_030 Hb_029921_030 Hb_001776_190--Hb_029921_030 Hb_008759_020 Hb_008759_020 Hb_001776_190--Hb_008759_020 Hb_000116_590 Hb_000116_590 Hb_001776_190--Hb_000116_590 Hb_011633_040 Hb_011633_040 Hb_001776_190--Hb_011633_040 Hb_000414_110 Hb_000414_110 Hb_000061_090--Hb_000414_110 Hb_000879_190 Hb_000879_190 Hb_000061_090--Hb_000879_190 Hb_007423_020 Hb_007423_020 Hb_000061_090--Hb_007423_020 Hb_000011_290 Hb_000011_290 Hb_000061_090--Hb_000011_290 Hb_003947_040 Hb_003947_040 Hb_000061_090--Hb_003947_040 Hb_002539_020 Hb_002539_020 Hb_000061_090--Hb_002539_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.406616 0.553206 0.317321 0 0.0426646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.148154 0.388415 0.715897 3.13805 1.0345

CAGE analysis