Hb_000653_010

Information

Type -
Description -
Location Contig653: 1142-1858
Sequence    

Annotation

kegg
ID cic:CICLE_v10033238mg
description hypothetical protein
nr
ID XP_006435837.1
description hypothetical protein CICLE_v10033238mg [Citrus clementina]
swissprot
ID Q94BT9
description Copper transport protein ATX1 OS=Arabidopsis thaliana GN=ATX1 PE=1 SV=1
trembl
ID V4T771
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033238mg PE=4 SV=1
Gene Ontology
ID GO:0005737
description copper transport protein cch

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52597: 1148-1837
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000653_010 0.0 - - hypothetical protein CICLE_v10033238mg [Citrus clementina]
2 Hb_008066_060 0.1220598098 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SBT1.6 [Jatropha curcas]
3 Hb_130563_010 0.1315554239 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
4 Hb_012753_190 0.1347390358 - - PREDICTED: protein HAPLESS 2 [Populus euphratica]
5 Hb_000836_480 0.1352859985 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
6 Hb_008226_020 0.1396199232 - - hypothetical protein JCGZ_03321 [Jatropha curcas]
7 Hb_000138_020 0.1436857499 - - PREDICTED: peroxidase A2-like [Jatropha curcas]
8 Hb_000911_050 0.1438242472 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 21 [Jatropha curcas]
9 Hb_036069_020 0.151359191 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
10 Hb_004223_180 0.1556916255 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
11 Hb_004310_170 0.1565979113 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
12 Hb_000032_560 0.1568983565 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
13 Hb_001545_270 0.1591878871 - - laccase, putative [Ricinus communis]
14 Hb_000005_230 0.1621850368 - - hypothetical protein POPTR_0009s01160g [Populus trichocarpa]
15 Hb_000580_070 0.1634577662 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
16 Hb_000116_120 0.1636902309 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
17 Hb_000393_030 0.1645512482 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_011671_420 0.1677794626 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
19 Hb_003398_090 0.1715488072 - - PREDICTED: expansin-A4 [Jatropha curcas]
20 Hb_000934_170 0.1722169215 - - alcohol dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000653_010 Hb_000653_010 Hb_008066_060 Hb_008066_060 Hb_000653_010--Hb_008066_060 Hb_130563_010 Hb_130563_010 Hb_000653_010--Hb_130563_010 Hb_012753_190 Hb_012753_190 Hb_000653_010--Hb_012753_190 Hb_000836_480 Hb_000836_480 Hb_000653_010--Hb_000836_480 Hb_008226_020 Hb_008226_020 Hb_000653_010--Hb_008226_020 Hb_000138_020 Hb_000138_020 Hb_000653_010--Hb_000138_020 Hb_000139_500 Hb_000139_500 Hb_008066_060--Hb_000139_500 Hb_000723_240 Hb_000723_240 Hb_008066_060--Hb_000723_240 Hb_008066_060--Hb_000836_480 Hb_001545_270 Hb_001545_270 Hb_008066_060--Hb_001545_270 Hb_008418_010 Hb_008418_010 Hb_008066_060--Hb_008418_010 Hb_036069_020 Hb_036069_020 Hb_130563_010--Hb_036069_020 Hb_004223_180 Hb_004223_180 Hb_130563_010--Hb_004223_180 Hb_031931_030 Hb_031931_030 Hb_130563_010--Hb_031931_030 Hb_001218_070 Hb_001218_070 Hb_130563_010--Hb_001218_070 Hb_000911_050 Hb_000911_050 Hb_130563_010--Hb_000911_050 Hb_003398_090 Hb_003398_090 Hb_130563_010--Hb_003398_090 Hb_001004_100 Hb_001004_100 Hb_012753_190--Hb_001004_100 Hb_006141_030 Hb_006141_030 Hb_012753_190--Hb_006141_030 Hb_007101_210 Hb_007101_210 Hb_012753_190--Hb_007101_210 Hb_000230_230 Hb_000230_230 Hb_012753_190--Hb_000230_230 Hb_001268_330 Hb_001268_330 Hb_012753_190--Hb_001268_330 Hb_004310_170 Hb_004310_170 Hb_000836_480--Hb_004310_170 Hb_000836_480--Hb_003398_090 Hb_015978_010 Hb_015978_010 Hb_000836_480--Hb_015978_010 Hb_000836_480--Hb_001545_270 Hb_008226_020--Hb_130563_010 Hb_008226_020--Hb_036069_020 Hb_008226_020--Hb_000911_050 Hb_003097_200 Hb_003097_200 Hb_008226_020--Hb_003097_200 Hb_008226_020--Hb_001545_270 Hb_001123_010 Hb_001123_010 Hb_000138_020--Hb_001123_010 Hb_033594_100 Hb_033594_100 Hb_000138_020--Hb_033594_100 Hb_032225_040 Hb_032225_040 Hb_000138_020--Hb_032225_040 Hb_000816_020 Hb_000816_020 Hb_000138_020--Hb_000816_020 Hb_003640_010 Hb_003640_010 Hb_000138_020--Hb_003640_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.06351 3.82465 4.94001 14.9807 0.245298 0.0934331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.4872 0.956994 1.31226 49.9867 10.1467

CAGE analysis