Hb_008226_020

Information

Type -
Description -
Location Contig8226: 14191-15803
Sequence    

Annotation

kegg
ID fve:101305307
description chalcone--flavonone isomerase-like
nr
ID KDP21650.1
description hypothetical protein JCGZ_03321 [Jatropha curcas]
swissprot
ID Q8VZW3
description Probable chalcone--flavonone isomerase 3 OS=Arabidopsis thaliana GN=CHI3 PE=1 SV=1
trembl
ID A0A067JNS6
description Chalcone-flavonone isomerase family protein OS=Jatropha curcas GN=JCGZ_03321 PE=3 SV=1
Gene Ontology
ID GO:0045430
description probable chalcone--flavonone isomerase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59641: 15145-15580
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008226_020 0.0 - - hypothetical protein JCGZ_03321 [Jatropha curcas]
2 Hb_130563_010 0.1330122608 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
3 Hb_000653_010 0.1396199232 - - hypothetical protein CICLE_v10033238mg [Citrus clementina]
4 Hb_036069_020 0.1422105675 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
5 Hb_000911_050 0.143340984 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 21 [Jatropha curcas]
6 Hb_003097_200 0.1584821742 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001545_270 0.1596288505 - - laccase, putative [Ricinus communis]
8 Hb_078081_020 0.1601574659 - - -
9 Hb_001218_070 0.16044573 - - PREDICTED: sugar transport protein 5-like isoform X1 [Jatropha curcas]
10 Hb_000797_030 0.1604945899 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
11 Hb_011671_420 0.1620920444 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
12 Hb_109673_010 0.1627441789 - - glutathione s-transferase, putative [Ricinus communis]
13 Hb_000207_340 0.1682608615 transcription factor TF Family: GRAS hypothetical protein POPTR_0013s11930g [Populus trichocarpa]
14 Hb_008066_060 0.1728309387 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SBT1.6 [Jatropha curcas]
15 Hb_004316_130 0.1730370553 - - PREDICTED: glutathione transferase GST 23-like, partial [Eucalyptus grandis]
16 Hb_000836_480 0.173460268 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
17 Hb_046770_010 0.1735245834 - - conserved hypothetical protein [Ricinus communis]
18 Hb_156499_010 0.176068121 - - hypothetical protein JCGZ_21064 [Jatropha curcas]
19 Hb_001758_120 0.1770643374 - - unnamed protein product [Vitis vinifera]
20 Hb_003189_020 0.1798419653 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]

Gene co-expression network

sample Hb_008226_020 Hb_008226_020 Hb_130563_010 Hb_130563_010 Hb_008226_020--Hb_130563_010 Hb_000653_010 Hb_000653_010 Hb_008226_020--Hb_000653_010 Hb_036069_020 Hb_036069_020 Hb_008226_020--Hb_036069_020 Hb_000911_050 Hb_000911_050 Hb_008226_020--Hb_000911_050 Hb_003097_200 Hb_003097_200 Hb_008226_020--Hb_003097_200 Hb_001545_270 Hb_001545_270 Hb_008226_020--Hb_001545_270 Hb_130563_010--Hb_036069_020 Hb_004223_180 Hb_004223_180 Hb_130563_010--Hb_004223_180 Hb_031931_030 Hb_031931_030 Hb_130563_010--Hb_031931_030 Hb_001218_070 Hb_001218_070 Hb_130563_010--Hb_001218_070 Hb_130563_010--Hb_000911_050 Hb_003398_090 Hb_003398_090 Hb_130563_010--Hb_003398_090 Hb_008066_060 Hb_008066_060 Hb_000653_010--Hb_008066_060 Hb_000653_010--Hb_130563_010 Hb_012753_190 Hb_012753_190 Hb_000653_010--Hb_012753_190 Hb_000836_480 Hb_000836_480 Hb_000653_010--Hb_000836_480 Hb_000138_020 Hb_000138_020 Hb_000653_010--Hb_000138_020 Hb_036069_020--Hb_000911_050 Hb_001758_120 Hb_001758_120 Hb_036069_020--Hb_001758_120 Hb_001377_010 Hb_001377_010 Hb_036069_020--Hb_001377_010 Hb_000207_340 Hb_000207_340 Hb_036069_020--Hb_000207_340 Hb_000797_030 Hb_000797_030 Hb_036069_020--Hb_000797_030 Hb_000911_050--Hb_000797_030 Hb_000911_050--Hb_003097_200 Hb_000911_050--Hb_001377_010 Hb_000911_050--Hb_001545_270 Hb_006637_040 Hb_006637_040 Hb_000911_050--Hb_006637_040 Hb_003097_200--Hb_000797_030 Hb_003893_100 Hb_003893_100 Hb_003097_200--Hb_003893_100 Hb_003097_200--Hb_006637_040 Hb_004316_130 Hb_004316_130 Hb_003097_200--Hb_004316_130 Hb_003097_200--Hb_001758_120 Hb_001922_010 Hb_001922_010 Hb_001545_270--Hb_001922_010 Hb_109673_010 Hb_109673_010 Hb_001545_270--Hb_109673_010 Hb_001545_270--Hb_001218_070 Hb_000723_240 Hb_000723_240 Hb_001545_270--Hb_000723_240 Hb_008418_010 Hb_008418_010 Hb_001545_270--Hb_008418_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.88543 5.56757 15.3371 65.4399 0.0551817 0.410597
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.59452 0.620839 0.703355 234.834 46.2943

CAGE analysis