Hb_004223_180

Information

Type -
Description -
Location Contig4223: 120346-120663
Sequence    

Annotation

kegg
ID cic:CICLE_v10002928mg
description hypothetical protein
nr
ID XP_012073824.1
description PREDICTED: auxin-induced protein 15A [Jatropha curcas]
swissprot
ID P33081
description Auxin-induced protein 15A OS=Glycine max PE=2 SV=1
trembl
ID A0A067KPJ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08234 PE=4 SV=1
Gene Ontology
ID GO:0009733
description auxin-induced protein 15a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41765: 120244-121296
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004223_180 0.0 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
2 Hb_130563_010 0.099053599 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
3 Hb_036069_020 0.1350156515 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
4 Hb_003090_180 0.1370677283 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
5 Hb_002870_010 0.1379028225 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
6 Hb_001377_010 0.141371936 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
7 Hb_000911_050 0.1461438228 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 21 [Jatropha curcas]
8 Hb_001104_210 0.146231047 - - hypothetical protein JCGZ_23620 [Jatropha curcas]
9 Hb_001218_070 0.1471137639 - - PREDICTED: sugar transport protein 5-like isoform X1 [Jatropha curcas]
10 Hb_008692_020 0.1485723562 - - -
11 Hb_001470_040 0.1491161116 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Jatropha curcas]
12 Hb_000393_030 0.1494192177 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_001514_070 0.1499781744 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_001545_270 0.1501789414 - - laccase, putative [Ricinus communis]
15 Hb_003398_090 0.1513409064 - - PREDICTED: expansin-A4 [Jatropha curcas]
16 Hb_001136_030 0.1517983167 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25-like [Jatropha curcas]
17 Hb_031931_030 0.1543886851 - - lipid binding protein, putative [Ricinus communis]
18 Hb_000653_010 0.1556916255 - - hypothetical protein CICLE_v10033238mg [Citrus clementina]
19 Hb_001430_090 0.1648135035 - - hypothetical protein JCGZ_05131 [Jatropha curcas]
20 Hb_001922_010 0.1669368647 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]

Gene co-expression network

sample Hb_004223_180 Hb_004223_180 Hb_130563_010 Hb_130563_010 Hb_004223_180--Hb_130563_010 Hb_036069_020 Hb_036069_020 Hb_004223_180--Hb_036069_020 Hb_003090_180 Hb_003090_180 Hb_004223_180--Hb_003090_180 Hb_002870_010 Hb_002870_010 Hb_004223_180--Hb_002870_010 Hb_001377_010 Hb_001377_010 Hb_004223_180--Hb_001377_010 Hb_000911_050 Hb_000911_050 Hb_004223_180--Hb_000911_050 Hb_130563_010--Hb_036069_020 Hb_031931_030 Hb_031931_030 Hb_130563_010--Hb_031931_030 Hb_001218_070 Hb_001218_070 Hb_130563_010--Hb_001218_070 Hb_130563_010--Hb_000911_050 Hb_003398_090 Hb_003398_090 Hb_130563_010--Hb_003398_090 Hb_036069_020--Hb_000911_050 Hb_001758_120 Hb_001758_120 Hb_036069_020--Hb_001758_120 Hb_036069_020--Hb_001377_010 Hb_000207_340 Hb_000207_340 Hb_036069_020--Hb_000207_340 Hb_000797_030 Hb_000797_030 Hb_036069_020--Hb_000797_030 Hb_001104_210 Hb_001104_210 Hb_003090_180--Hb_001104_210 Hb_004881_060 Hb_004881_060 Hb_003090_180--Hb_004881_060 Hb_000487_240 Hb_000487_240 Hb_003090_180--Hb_000487_240 Hb_000025_740 Hb_000025_740 Hb_003090_180--Hb_000025_740 Hb_001136_030 Hb_001136_030 Hb_003090_180--Hb_001136_030 Hb_003090_180--Hb_002870_010 Hb_002870_010--Hb_001377_010 Hb_001514_070 Hb_001514_070 Hb_002870_010--Hb_001514_070 Hb_002870_010--Hb_001136_030 Hb_002870_010--Hb_001104_210 Hb_012807_140 Hb_012807_140 Hb_002870_010--Hb_012807_140 Hb_001377_010--Hb_001136_030 Hb_001377_010--Hb_001104_210 Hb_001377_010--Hb_000911_050 Hb_001377_010--Hb_001514_070 Hb_001377_010--Hb_003090_180 Hb_000911_050--Hb_000797_030 Hb_003097_200 Hb_003097_200 Hb_000911_050--Hb_003097_200 Hb_001545_270 Hb_001545_270 Hb_000911_050--Hb_001545_270 Hb_006637_040 Hb_006637_040 Hb_000911_050--Hb_006637_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.136136 1.29051 0.946052 3.10442 0.387243 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 11.0056 2.44343

CAGE analysis