Hb_003090_180

Information

Type -
Description -
Location Contig3090: 176979-181578
Sequence    

Annotation

kegg
ID rcu:RCOM_0303160
description hypothetical protein
nr
ID XP_012087967.1
description PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JY97
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25088 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32646: 178914-179096
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003090_180 0.0 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
2 Hb_001104_210 0.0649604916 - - hypothetical protein JCGZ_23620 [Jatropha curcas]
3 Hb_004881_060 0.0712524234 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
4 Hb_000487_240 0.0833648196 - - PREDICTED: CYSTM1 family protein B [Cucumis melo]
5 Hb_000025_740 0.0967818973 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
6 Hb_001136_030 0.1016446925 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25-like [Jatropha curcas]
7 Hb_002870_010 0.1025098077 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
8 Hb_001377_010 0.1092995203 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
9 Hb_005211_090 0.1125097602 - - PREDICTED: aluminum-activated malate transporter 4-like isoform X1 [Jatropha curcas]
10 Hb_000276_030 0.1166043585 - - dimethylaniline monooxygenase, putative [Ricinus communis]
11 Hb_000580_070 0.1190085172 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
12 Hb_032050_050 0.1206547104 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
13 Hb_025526_010 0.1216047003 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104452086 [Eucalyptus grandis]
14 Hb_000205_210 0.1272815752 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
15 Hb_005116_010 0.1277023762 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
16 Hb_010334_040 0.1289079247 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
17 Hb_012807_140 0.1296609627 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
18 Hb_006788_150 0.1321231317 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002749_070 0.1323595641 - - PREDICTED: uncharacterized protein LOC105635941 [Jatropha curcas]
20 Hb_001514_070 0.1324710515 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_003090_180 Hb_003090_180 Hb_001104_210 Hb_001104_210 Hb_003090_180--Hb_001104_210 Hb_004881_060 Hb_004881_060 Hb_003090_180--Hb_004881_060 Hb_000487_240 Hb_000487_240 Hb_003090_180--Hb_000487_240 Hb_000025_740 Hb_000025_740 Hb_003090_180--Hb_000025_740 Hb_001136_030 Hb_001136_030 Hb_003090_180--Hb_001136_030 Hb_002870_010 Hb_002870_010 Hb_003090_180--Hb_002870_010 Hb_001104_210--Hb_001136_030 Hb_001377_010 Hb_001377_010 Hb_001104_210--Hb_001377_010 Hb_001104_210--Hb_004881_060 Hb_001104_210--Hb_000025_740 Hb_001104_210--Hb_002870_010 Hb_003900_050 Hb_003900_050 Hb_004881_060--Hb_003900_050 Hb_000205_210 Hb_000205_210 Hb_004881_060--Hb_000205_210 Hb_056101_010 Hb_056101_010 Hb_004881_060--Hb_056101_010 Hb_001105_200 Hb_001105_200 Hb_004881_060--Hb_001105_200 Hb_000276_030 Hb_000276_030 Hb_000487_240--Hb_000276_030 Hb_000487_240--Hb_001104_210 Hb_002182_050 Hb_002182_050 Hb_000487_240--Hb_002182_050 Hb_000487_240--Hb_000025_740 Hb_012807_140 Hb_012807_140 Hb_000487_240--Hb_012807_140 Hb_002749_070 Hb_002749_070 Hb_000025_740--Hb_002749_070 Hb_010334_040 Hb_010334_040 Hb_000025_740--Hb_010334_040 Hb_000005_350 Hb_000005_350 Hb_000025_740--Hb_000005_350 Hb_004544_070 Hb_004544_070 Hb_000025_740--Hb_004544_070 Hb_164283_010 Hb_164283_010 Hb_000025_740--Hb_164283_010 Hb_001136_030--Hb_001377_010 Hb_001136_030--Hb_002870_010 Hb_001136_030--Hb_004881_060 Hb_000911_050 Hb_000911_050 Hb_001136_030--Hb_000911_050 Hb_002870_010--Hb_001377_010 Hb_001514_070 Hb_001514_070 Hb_002870_010--Hb_001514_070 Hb_002870_010--Hb_012807_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0416142 1.2336 0.484948 1.24721 0.0215675 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.019864 0 6.45584 0.870779

CAGE analysis