Hb_000487_240

Information

Type -
Description -
Location Contig487: 230356-231067
Sequence    

Annotation

kegg
ID cmo:103502502
description CYSTM1 family protein B
nr
ID XP_008464677.1
description PREDICTED: CYSTM1 family protein B [Cucumis melo]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45022: 230595-230893
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000487_240 0.0 - - PREDICTED: CYSTM1 family protein B [Cucumis melo]
2 Hb_000276_030 0.0817581335 - - dimethylaniline monooxygenase, putative [Ricinus communis]
3 Hb_003090_180 0.0833648196 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
4 Hb_001104_210 0.0943623986 - - hypothetical protein JCGZ_23620 [Jatropha curcas]
5 Hb_002182_050 0.0966474081 - - hypothetical protein CICLE_v10022654mg [Citrus clementina]
6 Hb_000025_740 0.1018781143 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
7 Hb_012807_140 0.1026568298 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
8 Hb_002870_010 0.1054479716 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
9 Hb_004881_060 0.1115491153 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
10 Hb_001377_010 0.1118282808 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
11 Hb_159015_010 0.114726301 - - receptor protein kinase, putative [Ricinus communis]
12 Hb_000580_070 0.1156603301 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
13 Hb_000081_020 0.1165039618 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
14 Hb_032050_050 0.1192359425 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
15 Hb_005211_090 0.1208994316 - - PREDICTED: aluminum-activated malate transporter 4-like isoform X1 [Jatropha curcas]
16 Hb_003734_120 0.1210033644 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
17 Hb_076895_020 0.1227301139 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
18 Hb_001136_030 0.1240505177 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25-like [Jatropha curcas]
19 Hb_004712_020 0.1246169761 - - hypothetical protein JCGZ_00782 [Jatropha curcas]
20 Hb_188923_010 0.1268427545 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]

Gene co-expression network

sample Hb_000487_240 Hb_000487_240 Hb_000276_030 Hb_000276_030 Hb_000487_240--Hb_000276_030 Hb_003090_180 Hb_003090_180 Hb_000487_240--Hb_003090_180 Hb_001104_210 Hb_001104_210 Hb_000487_240--Hb_001104_210 Hb_002182_050 Hb_002182_050 Hb_000487_240--Hb_002182_050 Hb_000025_740 Hb_000025_740 Hb_000487_240--Hb_000025_740 Hb_012807_140 Hb_012807_140 Hb_000487_240--Hb_012807_140 Hb_003734_120 Hb_003734_120 Hb_000276_030--Hb_003734_120 Hb_001470_040 Hb_001470_040 Hb_000276_030--Hb_001470_040 Hb_005211_090 Hb_005211_090 Hb_000276_030--Hb_005211_090 Hb_003787_060 Hb_003787_060 Hb_000276_030--Hb_003787_060 Hb_000934_290 Hb_000934_290 Hb_000276_030--Hb_000934_290 Hb_003090_180--Hb_001104_210 Hb_004881_060 Hb_004881_060 Hb_003090_180--Hb_004881_060 Hb_003090_180--Hb_000025_740 Hb_001136_030 Hb_001136_030 Hb_003090_180--Hb_001136_030 Hb_002870_010 Hb_002870_010 Hb_003090_180--Hb_002870_010 Hb_001104_210--Hb_001136_030 Hb_001377_010 Hb_001377_010 Hb_001104_210--Hb_001377_010 Hb_001104_210--Hb_004881_060 Hb_001104_210--Hb_000025_740 Hb_001104_210--Hb_002870_010 Hb_159015_010 Hb_159015_010 Hb_002182_050--Hb_159015_010 Hb_018133_110 Hb_018133_110 Hb_002182_050--Hb_018133_110 Hb_000032_560 Hb_000032_560 Hb_002182_050--Hb_000032_560 Hb_005064_040 Hb_005064_040 Hb_002182_050--Hb_005064_040 Hb_116478_010 Hb_116478_010 Hb_002182_050--Hb_116478_010 Hb_002749_070 Hb_002749_070 Hb_000025_740--Hb_002749_070 Hb_010334_040 Hb_010334_040 Hb_000025_740--Hb_010334_040 Hb_000005_350 Hb_000005_350 Hb_000025_740--Hb_000005_350 Hb_004544_070 Hb_004544_070 Hb_000025_740--Hb_004544_070 Hb_164283_010 Hb_164283_010 Hb_000025_740--Hb_164283_010 Hb_004712_020 Hb_004712_020 Hb_012807_140--Hb_004712_020 Hb_001105_200 Hb_001105_200 Hb_012807_140--Hb_001105_200 Hb_012807_140--Hb_002870_010 Hb_002122_040 Hb_002122_040 Hb_012807_140--Hb_002122_040 Hb_009642_010 Hb_009642_010 Hb_012807_140--Hb_009642_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0413925 1.08244 0.322547 1.30925 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.03252 0.440306

CAGE analysis