Hb_159015_010

Information

Type -
Description -
Location Contig159015: 35-1813
Sequence    

Annotation

kegg
ID rcu:RCOM_1035000
description receptor protein kinase, putative (EC:2.7.11.30 1.3.1.74)
nr
ID XP_002513911.1
description receptor protein kinase, putative [Ricinus communis]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID B9RJJ2
description Receptor protein kinase, putative OS=Ricinus communis GN=RCOM_1035000 PE=4 SV=1
Gene Ontology
ID GO:0016772
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14123: 623-809 , PASA_asmbl_14124: 867-1340 , PASA_asmbl_14125: 1360-1491
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159015_010 0.0 - - receptor protein kinase, putative [Ricinus communis]
2 Hb_000497_120 0.0932556973 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005064_040 0.0958568401 - - hypothetical protein POPTR_0008s02680g [Populus trichocarpa]
4 Hb_116478_010 0.0988688402 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF003-like [Jatropha curcas]
5 Hb_002182_050 0.102299542 - - hypothetical protein CICLE_v10022654mg [Citrus clementina]
6 Hb_000487_240 0.114726301 - - PREDICTED: CYSTM1 family protein B [Cucumis melo]
7 Hb_000911_050 0.1184854038 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 21 [Jatropha curcas]
8 Hb_004544_070 0.1205563484 - - unnamed protein product [Vitis vinifera]
9 Hb_027141_010 0.12479474 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
10 Hb_000081_020 0.1284261016 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
11 Hb_002749_070 0.1323115708 - - PREDICTED: uncharacterized protein LOC105635941 [Jatropha curcas]
12 Hb_000438_190 0.1348916506 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
13 Hb_001104_210 0.1353926907 - - hypothetical protein JCGZ_23620 [Jatropha curcas]
14 Hb_001377_010 0.1356671881 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
15 Hb_000934_170 0.1363499351 - - alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_018133_110 0.1369183743 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
17 Hb_000205_210 0.1386296861 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
18 Hb_001758_120 0.1393102322 - - unnamed protein product [Vitis vinifera]
19 Hb_000539_080 0.1396368869 - - hypothetical protein POPTR_0039s00260g, partial [Populus trichocarpa]
20 Hb_000032_560 0.1408755185 - - hypothetical protein JCGZ_15037 [Jatropha curcas]

Gene co-expression network

sample Hb_159015_010 Hb_159015_010 Hb_000497_120 Hb_000497_120 Hb_159015_010--Hb_000497_120 Hb_005064_040 Hb_005064_040 Hb_159015_010--Hb_005064_040 Hb_116478_010 Hb_116478_010 Hb_159015_010--Hb_116478_010 Hb_002182_050 Hb_002182_050 Hb_159015_010--Hb_002182_050 Hb_000487_240 Hb_000487_240 Hb_159015_010--Hb_000487_240 Hb_000911_050 Hb_000911_050 Hb_159015_010--Hb_000911_050 Hb_000497_120--Hb_005064_040 Hb_031340_030 Hb_031340_030 Hb_000497_120--Hb_031340_030 Hb_027141_010 Hb_027141_010 Hb_000497_120--Hb_027141_010 Hb_000140_260 Hb_000140_260 Hb_000497_120--Hb_000140_260 Hb_000205_210 Hb_000205_210 Hb_000497_120--Hb_000205_210 Hb_000081_020 Hb_000081_020 Hb_005064_040--Hb_000081_020 Hb_005064_040--Hb_031340_030 Hb_000539_080 Hb_000539_080 Hb_005064_040--Hb_000539_080 Hb_005064_040--Hb_000140_260 Hb_116478_010--Hb_005064_040 Hb_116478_010--Hb_002182_050 Hb_116478_010--Hb_000497_120 Hb_000032_560 Hb_000032_560 Hb_116478_010--Hb_000032_560 Hb_006120_010 Hb_006120_010 Hb_116478_010--Hb_006120_010 Hb_002182_050--Hb_000487_240 Hb_018133_110 Hb_018133_110 Hb_002182_050--Hb_018133_110 Hb_002182_050--Hb_000032_560 Hb_002182_050--Hb_005064_040 Hb_000276_030 Hb_000276_030 Hb_000487_240--Hb_000276_030 Hb_003090_180 Hb_003090_180 Hb_000487_240--Hb_003090_180 Hb_001104_210 Hb_001104_210 Hb_000487_240--Hb_001104_210 Hb_000025_740 Hb_000025_740 Hb_000487_240--Hb_000025_740 Hb_012807_140 Hb_012807_140 Hb_000487_240--Hb_012807_140 Hb_000797_030 Hb_000797_030 Hb_000911_050--Hb_000797_030 Hb_036069_020 Hb_036069_020 Hb_000911_050--Hb_036069_020 Hb_003097_200 Hb_003097_200 Hb_000911_050--Hb_003097_200 Hb_001377_010 Hb_001377_010 Hb_000911_050--Hb_001377_010 Hb_001545_270 Hb_001545_270 Hb_000911_050--Hb_001545_270 Hb_006637_040 Hb_006637_040 Hb_000911_050--Hb_006637_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0295043 1.55647 0.304544 3.50774 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0529124 0 13.7198 0.883098

CAGE analysis