Hb_060658_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig60658: 323-2165
Sequence    

Annotation

kegg
ID rcu:RCOM_0174470
description hypothetical protein
nr
ID AAO37645.1
description NBS-LRR resistance protein RGH1 [Manihot esculenta]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID Q84XG0
description NBS-LRR resistance protein RGH1 OS=Manihot esculenta PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_060658_010 0.0 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
2 Hb_000574_250 0.1812217448 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
3 Hb_002311_260 0.1912181432 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
4 Hb_000414_180 0.203483083 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Vitis vinifera]
5 Hb_000454_160 0.2082609272 - - amidophosphoribosyltransferase, putative [Ricinus communis]
6 Hb_003938_110 0.2094953559 - - polyprotein [Ananas comosus]
7 Hb_069147_010 0.2099087801 desease resistance Gene Name: zf-BED PREDICTED: probable disease resistance protein At4g27220 isoform X1 [Populus euphratica]
8 Hb_000875_070 0.2119901368 - - -
9 Hb_033594_100 0.2139158565 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_001677_230 0.2141086383 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
11 Hb_002518_180 0.2150087511 - - hypothetical protein POPTR_0001s25460g [Populus trichocarpa]
12 Hb_044380_020 0.2153530132 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
13 Hb_005288_060 0.2195400448 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
14 Hb_009296_050 0.22008041 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
15 Hb_062671_010 0.2200932958 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
16 Hb_001619_010 0.2249820257 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
17 Hb_002122_050 0.2271771396 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
18 Hb_040473_010 0.2273202839 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
19 Hb_172939_010 0.2285967872 - - unknown [Picea sitchensis]
20 Hb_006700_040 0.2286956008 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]

Gene co-expression network

sample Hb_060658_010 Hb_060658_010 Hb_000574_250 Hb_000574_250 Hb_060658_010--Hb_000574_250 Hb_002311_260 Hb_002311_260 Hb_060658_010--Hb_002311_260 Hb_000414_180 Hb_000414_180 Hb_060658_010--Hb_000414_180 Hb_000454_160 Hb_000454_160 Hb_060658_010--Hb_000454_160 Hb_003938_110 Hb_003938_110 Hb_060658_010--Hb_003938_110 Hb_069147_010 Hb_069147_010 Hb_060658_010--Hb_069147_010 Hb_033594_100 Hb_033594_100 Hb_000574_250--Hb_033594_100 Hb_005288_060 Hb_005288_060 Hb_000574_250--Hb_005288_060 Hb_000453_240 Hb_000453_240 Hb_000574_250--Hb_000453_240 Hb_001040_150 Hb_001040_150 Hb_000574_250--Hb_001040_150 Hb_006700_040 Hb_006700_040 Hb_000574_250--Hb_006700_040 Hb_182651_020 Hb_182651_020 Hb_002311_260--Hb_182651_020 Hb_000019_010 Hb_000019_010 Hb_002311_260--Hb_000019_010 Hb_002311_260--Hb_003938_110 Hb_001737_040 Hb_001737_040 Hb_002311_260--Hb_001737_040 Hb_000366_030 Hb_000366_030 Hb_002311_260--Hb_000366_030 Hb_062013_010 Hb_062013_010 Hb_000414_180--Hb_062013_010 Hb_000414_180--Hb_005288_060 Hb_001793_030 Hb_001793_030 Hb_000414_180--Hb_001793_030 Hb_000329_080 Hb_000329_080 Hb_000414_180--Hb_000329_080 Hb_001080_150 Hb_001080_150 Hb_000414_180--Hb_001080_150 Hb_000414_180--Hb_000454_160 Hb_012404_080 Hb_012404_080 Hb_000454_160--Hb_012404_080 Hb_011609_210 Hb_011609_210 Hb_000454_160--Hb_011609_210 Hb_018272_050 Hb_018272_050 Hb_000454_160--Hb_018272_050 Hb_000977_150 Hb_000977_150 Hb_000454_160--Hb_000977_150 Hb_002518_180 Hb_002518_180 Hb_000454_160--Hb_002518_180 Hb_000875_070 Hb_000875_070 Hb_003938_110--Hb_000875_070 Hb_008511_140 Hb_008511_140 Hb_003938_110--Hb_008511_140 Hb_003938_110--Hb_012404_080 Hb_009296_050 Hb_009296_050 Hb_003938_110--Hb_009296_050 Hb_044380_020 Hb_044380_020 Hb_003938_110--Hb_044380_020 Hb_004052_060 Hb_004052_060 Hb_069147_010--Hb_004052_060 Hb_009848_060 Hb_009848_060 Hb_069147_010--Hb_009848_060 Hb_069147_010--Hb_000414_180 Hb_185058_020 Hb_185058_020 Hb_069147_010--Hb_185058_020 Hb_041813_050 Hb_041813_050 Hb_069147_010--Hb_041813_050 Hb_069147_010--Hb_044380_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0261343 0.360635 0.062055 0.509845 0 0.205614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.238735 0.0626108 0.118226 1.26398 1.62438

CAGE analysis