Hb_001737_040

Information

Type -
Description -
Location Contig1737: 75981-76874
Sequence    

Annotation

kegg
ID sot:102596609
description uncharacterized LOC102596609
nr
ID XP_009605667.1
description PREDICTED: uncharacterized protein LOC104100193 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID W9S8P4
description E3 ubiquitin-protein ligase UPL6 OS=Morus notabilis GN=L484_005974 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase upl6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001737_040 0.0 - - PREDICTED: uncharacterized protein LOC104100193 [Nicotiana tomentosiformis]
2 Hb_001971_050 0.1325971158 - - WD-repeat protein, putative [Ricinus communis]
3 Hb_000714_120 0.1452251424 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
4 Hb_002888_050 0.150986389 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
5 Hb_000392_490 0.1611959004 - - PREDICTED: uncharacterized protein LOC105640495 isoform X1 [Jatropha curcas]
6 Hb_005332_050 0.1693440419 - - hypothetical protein POPTR_0017s10650g [Populus trichocarpa]
7 Hb_002110_090 0.1720644163 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
8 Hb_001963_110 0.1720900581 - - -
9 Hb_002685_220 0.1726275911 - - PREDICTED: cationic amino acid transporter 4, vacuolar-like isoform X1 [Jatropha curcas]
10 Hb_011161_090 0.172768378 - - -
11 Hb_062013_010 0.1736799467 - - phosphoprotein phosphatase, putative [Ricinus communis]
12 Hb_001778_040 0.1736813102 - - hypothetical protein VITISV_021035 [Vitis vinifera]
13 Hb_046117_030 0.1738636206 - - sialyltransferase, putative [Ricinus communis]
14 Hb_002983_090 0.176018746 - - Altered inheritance of mitochondria protein 32 [Glycine soja]
15 Hb_000313_230 0.1767609324 - - PREDICTED: uncharacterized protein LOC105636893 [Jatropha curcas]
16 Hb_001629_050 0.1774150845 - - structural constituent of cell wall, putative [Ricinus communis]
17 Hb_167211_010 0.1774968097 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
18 Hb_006040_170 0.1793956859 - - NADH-ubiquinone oxidoreductase chain [Medicago truncatula]
19 Hb_006355_070 0.1802845574 transcription factor TF Family: bHLH Phytochrome-interacting factor, putative [Ricinus communis]
20 Hb_094437_020 0.1809206514 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001737_040 Hb_001737_040 Hb_001971_050 Hb_001971_050 Hb_001737_040--Hb_001971_050 Hb_000714_120 Hb_000714_120 Hb_001737_040--Hb_000714_120 Hb_002888_050 Hb_002888_050 Hb_001737_040--Hb_002888_050 Hb_000392_490 Hb_000392_490 Hb_001737_040--Hb_000392_490 Hb_005332_050 Hb_005332_050 Hb_001737_040--Hb_005332_050 Hb_002110_090 Hb_002110_090 Hb_001737_040--Hb_002110_090 Hb_029510_090 Hb_029510_090 Hb_001971_050--Hb_029510_090 Hb_001778_040 Hb_001778_040 Hb_001971_050--Hb_001778_040 Hb_013848_030 Hb_013848_030 Hb_001971_050--Hb_013848_030 Hb_000254_060 Hb_000254_060 Hb_001971_050--Hb_000254_060 Hb_004785_090 Hb_004785_090 Hb_001971_050--Hb_004785_090 Hb_004864_020 Hb_004864_020 Hb_000714_120--Hb_004864_020 Hb_000757_020 Hb_000757_020 Hb_000714_120--Hb_000757_020 Hb_003177_090 Hb_003177_090 Hb_000714_120--Hb_003177_090 Hb_002099_060 Hb_002099_060 Hb_000714_120--Hb_002099_060 Hb_000714_120--Hb_002110_090 Hb_000418_150 Hb_000418_150 Hb_000714_120--Hb_000418_150 Hb_002814_050 Hb_002814_050 Hb_002888_050--Hb_002814_050 Hb_006355_070 Hb_006355_070 Hb_002888_050--Hb_006355_070 Hb_002308_060 Hb_002308_060 Hb_002888_050--Hb_002308_060 Hb_004307_070 Hb_004307_070 Hb_002888_050--Hb_004307_070 Hb_003992_220 Hb_003992_220 Hb_002888_050--Hb_003992_220 Hb_000309_070 Hb_000309_070 Hb_000392_490--Hb_000309_070 Hb_006916_140 Hb_006916_140 Hb_000392_490--Hb_006916_140 Hb_001629_050 Hb_001629_050 Hb_000392_490--Hb_001629_050 Hb_005329_030 Hb_005329_030 Hb_000392_490--Hb_005329_030 Hb_026198_020 Hb_026198_020 Hb_000392_490--Hb_026198_020 Hb_000963_120 Hb_000963_120 Hb_000392_490--Hb_000963_120 Hb_004607_160 Hb_004607_160 Hb_005332_050--Hb_004607_160 Hb_167211_010 Hb_167211_010 Hb_005332_050--Hb_167211_010 Hb_000130_480 Hb_000130_480 Hb_005332_050--Hb_000130_480 Hb_007850_110 Hb_007850_110 Hb_005332_050--Hb_007850_110 Hb_000836_030 Hb_000836_030 Hb_005332_050--Hb_000836_030 Hb_005332_050--Hb_001778_040 Hb_001269_520 Hb_001269_520 Hb_002110_090--Hb_001269_520 Hb_000251_050 Hb_000251_050 Hb_002110_090--Hb_000251_050 Hb_002110_090--Hb_003177_090 Hb_000107_550 Hb_000107_550 Hb_002110_090--Hb_000107_550 Hb_000181_230 Hb_000181_230 Hb_002110_090--Hb_000181_230 Hb_002110_090--Hb_002099_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.702244 8.80765 5.68619 22.6125 0.256184 3.68627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.360914 19.3802 35.0138

CAGE analysis